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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatctattttttgcaatgaaattatgagctttagtgttattttaacaggatgagtctgtaacttatctacattttgaagGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA

Basic information

species Vitis vinifera
transcript Vv01s0011g04920.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 3'ss of exon 3
-gtatatatctatt--ttttgcaatgaaattatgagctttagtgttattttaacaggatgagtctgtaacttatctacattttga---agGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA
  ||   || ||||  | |||  | || |||          |        || |  |   |     | | || || |   || |    ||||||| ||||||||||||||||||||||| || ||  | ||||| | |||||| || || 
gttaggcatttattaatgttgagaagatatttcttaacaatgaacagccatatcttggc-atctaatgaattttccatgcttcgttctagGATTATGTGGCAACTAGATGGTATCGTGCCCCAGAGTTGTGTGGCTCCTTTTTTTCAAAG

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g45620.1 (Oryza sativa), 3'ss of exon 2
-----------------------gtatatatctattttttgc-aatgaaatta-----tgagctttagtgttattttaacaggatgagtctgtaacttatctacattttgaagGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA
                       ||| |     || | |||  |||    |||     | |||     |  || ||| | |   | | ||  |   |  ||    | | | |||||||||||||||| ||||||||||| ||||| ||  | || || |  || || || || 
gtaaaagaacaatcctagtactagtacagtcagatatgttgagaattgtgttagcccttaagcacccatcatagtttga-attttaattcgttttgtggtccttttgtcgtagGATTACGTGGCAACAAGATGGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAG

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G062761_T02 (Zea mays), 3'ss of exon 3
gta--tatatctattttttgcaatgaaattatgagctttagtgttattttaacaggatgagtctgtaacttatctacattt--tgaagGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA
|||   || |  || || |  |   ||||||||    ||       |    ||  |||     | | |  ||    | |||  || ||||||||||||| |||||||||||||| ||||| ||| | ||||| | |||||| || || 
gtagccattttgatattgttgagcaaaattatgtttgttga-acagtcaagacttgattttcttatgatgtagaatcttttgctgtagGATTACGTGGCCACTAGATGGTATCGAGCTCCAGAATTATGTGGCTCCTTTTTTTCAAAG

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G375975_T01 (Zea mays), 3'ss of exon 2
gtatatatctattttttgcaatgaaattatgagctttagtgt-tattttaacaggatgagtctgtaacttatctacatt-ttgaagGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA
   ||     |     |  | ||  | | ||||      |    |     ||||  | ||| | |    |  ||   |  ||  ||||||| |||||||| ||||||||||||||||| ||| | || || | ||| || || || 
--gtaaccagagcacatatattgtgactgtgagacacgataagcagccacacagtttaagtttttgttcttgctgtgtaattacagGATTATGTGGCAACAAGATGGTATCGTGCTCCAGAATTATGCGGCTCCTTCTTTTCAAAG

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 4
-----gtatatatctattttttgcaatgaaattat-----gagctttagtgt---tattttaacagg---atgagtctgtaac--ttatctacattttgaagGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA
       || || ||   | |   |   ||| | |       ||||     |   |||||| | | |    ||||    |  |  |||| |  |||||| ||||||| || || ||| | ||||||||||| |||||||||||||| |  ||||||||||||
gtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtagGATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagctttagtgttattttaacaggatgagtctgtaacttatctacattttgaagGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAA
     tttagtgttattttaa  TA-rich tract