Sequence
atgc intronic sequence ATGC exonic sequence...ttttttgttttgagaataactgaaaatgaaagctgtcacacttacgaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g03144.1 (Oryza sativa), 3'ss of exon 3
ttttttgttttgagaataactgaaaatgaaagctgtcacacttacgaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaa---------gGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
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------gggcagaacctacataatatctatcgctgtc-tgttcaagtatttccct--ttttattttgtatcaccaggtatttatttctttttattataactggttgtagGTTAACTGTGCTGACTCAATTGTGGGTGATGCAAAAGTACGTGGAATAAGTGGGGGTGAAAAGAAGCGTCTCTCCCTTGCGTGTGAACTGATTGCTAGCC
upper sequence: Vv01s0011g04670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G119345_T01 (Zea mays), 3'ss of exon 3
ttttttgttttgagaataactgaaaatgaaagctgtcacacttacgaatttttgtgatctttttttct--tttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
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-----------gtgagtgctagaattttga--ttattgtttctagaaattgaagtgaacggttcggaggacagtcttaatggttgga----tcgttgagtagGTCAATTGTGCTGATTCTATTGTTGGTGATGCAAAAGTTCGTGGAATAAGTGGGGGTGAGAAGAAGCGCCTCTCACTTGCATGTGAGTTGATTGCTAGCC
upper sequence: Vv01s0011g04670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G41110.1 (Glycine max), 3'ss of exon 3
ttttttgttttgaga--ataactgaaaatgaaagctgtcacacttacgaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
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attcctctttcaaatttatgattgaaaatgt--gttgctcttgttggatagtcctatgttactgatactccctgtggcatctgtatgctttttcttcaaaagGTTAGCTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTATCCATGGCATGTGAACTGCTTGCAAGCC
upper sequence: Vv01s0011g04670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G26160.1 (Glycine max), 3'ss of exon 3
ttttttgttttgaga--ataactgaaaatgaaagctgtcacacttacgaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
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tttcctctttcaaatttatgattgaaaatgt--gttgctcttgttggatagtcctatgttactgatactccctttggcatctgtatgctttttcttcaaaagGTTAGCTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTATCCATGGCATGTGAACTACTTGCAAGCC
upper sequence: Vv01s0011g04670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G01320.2 (Arabidopsis thaliana), 3'ss of exon 3
ttttttgttttgagaataactgaaaat-gaaagctgtcacactta--cgaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
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-gtgaggtttcattgatctctgcattttggatgatattgtggtagattgaaatcctggaattatgtttcttgatcgtcttttgtggctctc------caaaagGTCAGCTGTGCAGATTCATGTGTTGGCGATGCTAAAGTTCGTGGGATCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
tctttttttcttttcc CT-rich tract
atctttttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttgttttgagaataactgaaaatgaaagctgtcacacttacgaatttttgtgatctttttttcttttcccttatggttattctctttcttcaaaagGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - -gaataac
- - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - ctgtcac