Sequence
atgc intronic sequence ATGC exonic sequence...tcaatgattcactttttatttattatttattcttaatggcatccttttgaatgttctacatacaattgttttattgtttattctccttgcttttttacagTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G25600.1 (Glycine max), 3'ss of exon 3
----------------------tcaatgatt-cactttttatttattatttattcttaatggc--atccttttgaatgttctacatacaattgttttat---tgtttattctccttgcttttttacagTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCT
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gtacaatttcttccttttttcttcaatttttgtacaaataaattatgagagatacttgtcagttgggaacctagatggaattataaattattgttccttgcattttttgtcttctgaattgtttgtagTGGAGGCAAGTGTTACAGCTGCCACAATCACACAAGAAAGGTGTTACATGCATTAGTGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTT
upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G41620.1 (Glycine max), 3'ss of exon 3
-------------tcaatgattcactttttatttatt---atttattcttaatggcatccttttg--aatgttctacatacaattgt--tttattgtttatt----------ctccttgcttttttacagTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCT
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gtacaattttgttcctttttttccctctatttttgtacaaataaattatgaaagacatttgtcagttgggaacttagatggaattataaattattgtttcttgcatatttgtcttttgaattgtttgtagTGGAGGCAAATGTTACAGCTGCCACAATCACACAAGAAAGGTGTTACATGCATTAGTGGAATTATGGTTTCTCAAACCGAGGCAATCTTTGCATCTACTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgaatgttctacatacaattgttttattgtttattctccttgcttttttacagTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCT
ttttattgtttattct CT-rich tract
atacaattgttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaatgattcactttttatttattatttattcttaatggcatccttttgaatgttctacatacaattgttttattgtttattctccttgcttttttacagTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCT
- - - - - - - - - - - - - - - - - - - gcatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataca