Sequence
atgc intronic sequence ATGC exonic sequence...cttttggtgtccctctttactatatatactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34730.1 (Glycine max), 3'ss of exon 2
cttttggtgtccctctttactatata-tactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaa---agGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
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-------------------gtggatagcatgagttttattcaa--accttaatactggattatttttcaatcaatataaatagttatatggttataaaatttagGTGTCAAGCAAGATGGAAGTGCTTCTCACCTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAGATATGTGGTCAGGATTT
upper sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G32690.1 (Glycine max), 3'ss of exon 3
cttttggtgtccctctttactatata-tactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaa---agGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
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-------------------gtggatagcatgagttttattcaa--atcttaatactggattatttttcaatcaatgtaaatagttatatgattataaaatttagGTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGGCGTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTT
upper sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G11140.1 (Glycine max), 3'ss of exon 3
-cttttggtgtccctctttactatatatactacttttctt--tacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
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gttggtagcagtagttttattcaaatttgattttttttttattactttccaatcaatatgacaaactatgatgaaaatttt--------------------agGTGTTAGGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAAGGCTTACAACACGGGCACCCGAAAGCGCCGAAAAATACTAGGGCAAGATTT
upper sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G22510.1 (Glycine max), 3'ss of exon 3
cttttggtgtccctctttactatatatactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
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--gttggtagcaaatttttattcaaatctgaattttttgttttt-ttgttactttccaatcaatatga---taatctatgatgaaaatttt-------agGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAACGCTTACAACACCGGCACCCGAAAGCGCCGAAAAATACTAGGGCAAGATTT
upper sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G25580.1 (Arabidopsis thaliana), 3'ss of exon 3
cttttggtgtccctctttacta-tatatactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
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--------gtcaggcaatacaggtttcttctttctgttttcagtcatcaaagaagttccaaaaattatttgatctcacttaaattgactattttta----gGTGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCACAGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543117|gb|CF511349.1|CF511349EST: TGTTGAGGAAGATGATGGAATCTGCTATACCCATCCTCAGAATCTGCCAG GTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGG
genomic: TGTTGAGGAAGATGATGGAATCTGCTATACCCATCCTCAGAATCTGCCAGgttaaaataa ... ttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
cttgagctttttcttt CT-rich tract
tttttcttttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttttggtgtccctctttactatatatactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaaagGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
cttttgg
- - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - -cctatca
- - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa