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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC

Basic information

species Vitis vinifera
transcript Vv01s0011g02820.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G17050.1 (Glycine max), 3'ss of exon 3
gtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC
          ||| ||   |  |||||||| |     ||| ||||  | || | ||    || || |||||     |||| | |||||||||||||||||||| |||||  ||||||||| |||  ||||| ||| |||| |||||| |||||   |||| ||| || || |   |||||   |||||||
--------gtggacgagaaa--ttttttatctgaaatatgaatcag-ttaaattaatcacatcct-aattatatggaattgcatatgcagTCTCACTATCCTCACCCAGTCACCACATCTACAAATTTGCCTTCTGCTGTAAGTGGGTCTTTGAGTGATCCTAGCTCTCATACCACACAGCATGGACTTC

upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G11300.2 (Glycine max), 3'ss of exon 3
gtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC
|||||| | |  ||           ||||| |   | ||| ||||  | || | |||   || || |||||     |||| | |||||||||||||||||||  ||| |  ||||||||| |||| ||||| ||| |||| |||||| ||||| | |||| ||| || || |   ||||| | |||||||
gtggatgagaaaata----------tttatctgaattatgaatcag-ttaaattaaccacatcct-aattatatggaattgcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTC

upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G11320.1 (Glycine max), 3'ss of exon 3
gtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC
|||||| | |  ||          | || | |   | | | | ||  | || | ||    || || |||||     |||| | |||||||||||||||||||  ||| |  ||||||||| |||| ||||| ||| |||| |||||| ||||| | |||| ||| || || |   ||||  | |||||||
gtggatgagaaaat----------tgttgtctgaattaagaaccag-ttaaattaatcacatcct-aattatatgaaattgcatatgcagTCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAACTTGGACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC
                                           tttcttat  CT-rich tract
                               aattaaccttaattt  TA-rich tract