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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccattcatacccattccaattcggttttcttttaccaagagatccagttgacattatctcaccttactatagatattttgtaacttttacagtcaaaatttaatgtatcacacagccttttgcagtatcatttcttcatcttttgtgtacttaaatttcatggtggttgtattccagGATGATATACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTG

Basic information

species Vitis vinifera
transcript Vv01s0011g00760.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G03210.1 (Glycine max), 3'ss of exon 3
gtaagcccattcatacccattccaattcggttttcttttaccaagagatccagttgacattatctcaccttactatagatattttgtaacttttacagtcaaaatttaatgta-tcacacagccttttgcagtatcatttcttcatcttttgtgtacttaaatttcatggtggttgtat-tccagGATGATATACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTG
                                                                                |||| |    ||| | |||  | ||  |||  |  |||         |    ||  | || | ||| |||| | ||   ||||| |||  || || |   | ||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| ||  
--------------------------------------------------------------------------------atttggcctatttcatagt--agatacaattcaaccacctttaaccctaggttaaaagttgtgcatttttttttta---aaattgcatattgtttttccatgcagGAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA

upper sequence: Vv01s0011g00760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G26560.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagcccattcatacccattccaattcggttttcttttaccaagagatccagttgacattatctcaccttactatagatattttgtaacttttacagtcaa--aatttaatgtatcacaca---gccttttgcagtatcatttcttcatcttttgtgtacttaaatttcatggtggttgtattccagGATGATATACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTG
                                                                               ||      || || || | | ||  ||   ||||    | |      | ||| | |   | | ||  | |  |||||   | |  ||||  |||||| | |     ||||| ||| ||||||| |||||||| ||||||||||| || |||||||||||||| || ||| |||| || || ||  
------------------------------------------------------------------------------gtaaaccccaatttctataataaattaacaaaatggtcaataagtatacatttcgaaaatttaattaatgaagttttg---attggaatt--atggtgatgg-----cagGAAGATGTACAACTTATGAAGAATATGGGAATGGACGCTTACAGATTTTCCATTTCTTGGACCCGCATCTTTCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtatcatttcttcatcttttgtgtacttaaatttcatggtggttgtattccagGATGATATACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTG
                         tacttaaatttcat  TA-rich tract