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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttataatgccttggctcgtattctttgagttaatgctttcccatatatatggtttttgtgtgtgtgtgtgtgtgtgttttggttttatttttatttatttatttttaatcttgttctcttttccttttttatgcatgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG

Basic information

species Vitis vinifera
transcript Vv01s0011g00550.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051568|gb|FQ450120.1|FQ450120
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|351014788|gb|FQ437988.1|FQ437988
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|110361486|gb|EC924960.1|EC924960
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|349808731|gb|FQ406581.1|FQ406581
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|352786080|gb|FQ481875.1|FQ481875
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|351042817|gb|FQ434379.1|FQ434379
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAT
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|351054615|gb|FQ456812.1|FQ456812
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|349829486|gb|FQ420018.1|FQ420018
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
EST: gi|349830592|gb|FQ416890.1|FQ416890
EST:     TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG                         AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
genomic: TTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGgtttgtttta ... catgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttatttatttttaatcttgttctcttttccttttttatgcatgttttagAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG
              ttttaat  putative branch site (score: 3)
                    tcttgttctcttttcc  CT-rich tract
     tttatttatttttaat  TA-rich tract