1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatactttgtattatagtttgcaagtggttgtgacagtgtattatatcattattttagttgctgttctttccttattgtttttttgactttcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCAATGGCGGTAAGCTTGTAAAAAATGTGGCTTCCAAACCAGTTCTTGTGG
species | Vitis vinifera |
transcript | Vv01s0010g03830.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCTGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110415766|gb|EC981699.1|EC981699
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCTGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110392482|gb|EC957934.1|EC957934
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|27586450|gb|CB009145.1|CB009145
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110402841|gb|EC963595.1|EC963595
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|33408889|gb|CF214516.1|CF214516
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110409821|gb|EC975493.1|EC975493
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCTGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110694543|gb|EE071739.1|EE071739
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110371366|gb|EC935335.1|EC935335
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCEST: gi|110721737|gb|EE097352.1|EE097352
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
atcattattttagttgctgttctttccttattgtttttttgactttcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCAATGGCGGTAAGCTTGTAAAAAATGTGGCTTCCAAACCAGTTCTTGTGG
ttttgac putative branch site (score: 3)
ttctttccttattgtt CT-rich tract
ttattgtttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatactttgtattatagtttgcaagtggttgtgacagtgtattatatcattattttagttgctgttctttccttattgtttttttgactttcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCCAATGGCGGTAAGCTTGTAAAAAATGTGGCTTCCAAACCAGTTCTTGTGG
- - - - - - - - - - - - - ggttgtg