1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tataagtttttcttctccaattgtagcactttttgttgattttagggcaatagtaacaatggtgataattactttctatctaaaacattttttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCATATGTAGGTTCTGGTGCACCCTCTTCAATGTATCTTGGCGTGCCACCAT
species | Vitis vinifera |
transcript | Vv01s0010g03700.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|349808005|gb|FQ402396.1|FQ402396
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|349807671|gb|FQ402062.1|FQ402062
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|71858373|gb|DT007428.1|DT007428
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|349814507|gb|FQ399147.1|FQ399147
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|349815268|gb|FQ400423.1|FQ400423
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|110381005|gb|EC946312.1|EC946312
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCAEST: gi|352777438|gb|FQ474072.1|FQ474072
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
EST: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCA AAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
genomic: CTTGCAATATGCGCAATTGTACCCAACCCAGACCAGCTGATCATAACTCAgtaagatgtg ... tttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCA
ggcaatagtaacaatggtgataattactttctatctaaaacattttttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCATATGTAGGTTCTGGTGCACCCTCTTCAATGTATCTTGGCGTGCCACCAT
ttttttttacc CT-rich tract
tgataattactttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataagtttttcttctccaattgtagcactttttgttgattttagggcaatagtaacaatggtgataattactttctatctaaaacattttttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACTCCTCAGCTCCATATGTAGGTTCTGGTGCACCCTCTTCAATGTATCTTGGCGTGCCACCAT
- - - - - -cttctcc
- - - - - - - - - - -tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacat