Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattcaattgcccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA

Basic information

species Vitis vinifera
transcript Vv01s0010g03380.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os09g08430.1 (Oryza sativa), 3'ss of exon 4
-----gtatgtattcaattgcccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
       |||||     |     ||||     | |  |   || | | | | || |  |||  ||  | | ||    |    | || |||||||||||||||||||| | || ||  | || ||||| ||||| |||||||| ||||| || |||||||| || ||||| ||||||||| | ||||
gtttgcaatgtagattgtgagatttcatagcttgtcattaactgt-tttgtgatgcttactttct--tcattgct--tcaccatagGTGAAAGGTCTGGATGTTGATACTCTTTATGTGTCCCACATTCAAGTTAACCAGGCCCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGACGCATCA

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G702426_T01 (Zea mays), 3'ss of exon 4
gtatgtattcaattgcccttcaccatgtattctctgc-tttgtctataattccaactaactaat--------aaatgtcaatt-cttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
|||||   ||  ||| |  |  |  |  ||| |  || |      | | |||| |||  ||  |        | |||||  ||  || ||| |||||||  |||| || ||    |||||  | || |||||||| |||||||| || ||||| || ||||||||||| ||||| ||||| ||| | || |
gtatgccctc--ttgtctcttccttttcattttaagcgtgcactcacatttcctactgtctggtttgacttaacatgtctgttatttccagGTGAAAGGCTTGGACGTGGACAACCTCTATGTTTCACACATCCAGGTGAACCAAGCCCAGAAGCAGAGGCGCCGCACCTACCGTGCTCACGGACGCATTA

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G27940.1 (Glycine max), 3'ss of exon 4
---gtatgtattcaattgc-ccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
    ||| || ||  ||   ||||  |||| |      |   |  | |  ||  | || ||||| | || |||   |  || ||| |||||||| ||||||||||| | || ||||| ||||| |||||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||
gtattatatactctttttttccttttccatatggctattttatgatttccaaa-ctaattaactgaaaattgtt--tcttttcagGTGAAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCA

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G10910.2 (Glycine max), 3'ss of exon 4
----------gtatgtattcaattgcccttcaccatg--tattctctgct--ttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
           |||   ||   ||||  |||   |||  ||||   |||    ||| |  || |  |  ||||| |  ||| |   |  || ||| |||||||| ||||||||||| |||| ||||| || || |||||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||
gtatgtctatatatacttttttttgcttttccatatggctatttcatgccaactgtttccaaattaatttaactga--aatttttttcttttcagGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCA

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 4
-----------gtatgtattcaatt--gcccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
            || | |||  |||      ||||     |  | |    |     |  ||   ||    |||  |   | |   ||   |||| |||||||| ||||||| ||| | || ||||| ||||| ||||| || || || |||||||| ||||| |||||||| ||| | ||||||||||||||||
gtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCA

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G67430.1 (Arabidopsis thaliana), 3'ss of exon 4
-----gtatgtattcaattgcccttcaccatgtattctctgctttgtctataat-tccaactaactaataaatgtcaattctta-----cagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
         | ||||| ||          |  | ||||    | | ||| ||   |    ||||  |  | || |  | | | |     ||| |||||||| ||||||||||| | |||| |||||| ||||||||||||||||||||    || |||||| |  | || ||||| ||||| ||||||||||
gtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAACCAGGCCGCAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCA

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtattcaattgcccttcaccatgt----attctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
||  || ||      |  ||     |||    ||  |    || ||   | | |  ||||   |   ||   |    |  | ||| | |||||| ||||||| ||| | || | ||| |||||||||||||||||||| |||   ||||| ||| |  | ||||| || ||||||||||||||||
gttggttttacgactctttttgttttgttgccatggtgattttagttagttactaaaactttttgtaaaccatttggttat-cagGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACCAAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013781|gb|FQ433933.1|FQ433933
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110397843|gb|EC963779.1|EC963779
EST:     CTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110385986|gb|EC950553.1|EC950553
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110376461|gb|EC941526.1|EC941526
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|71873657|gb|DT022712.1|DT022712
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110378218|gb|EC943338.1|EC943338
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110688549|gb|EE067229.1|EE067229
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110692078|gb|EE070908.1|EE070908
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110423054|gb|EC989389.1|EC989389
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110689601|gb|EE065966.1|EE065966
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|71869773|gb|DT018828.1|DT018828
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110689920|gb|EE066564.1|EE066564
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110715617|gb|EE093874.1|EE093874
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110419782|gb|EC986031.1|EC986031
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|34416764|gb|CF415518.1|CF415518
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110717067|gb|EE092597.1|EE092597
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|351024796|gb|FQ430621.1|FQ430621
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110374693|gb|EC939616.1|EC939616
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110387423|gb|EC952086.1|EC952086
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110391452|gb|EC956429.1|EC956429
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|352787033|gb|FQ476066.1|FQ476066
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|56409601|gb|CX017853.1|CX017853
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110372343|gb|EC936500.1|EC936500
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110694415|gb|EE071499.1|EE071499
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|71873227|gb|DT022282.1|DT022282
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110705483|gb|EE082385.1|EE082385
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|77588447|gb|DV223435.1|DV223435
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|77579783|gb|DV218769.1|DV218769
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110375254|gb|EC940222.1|EC940222
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110691990|gb|EE070724.1|EE070724
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110715297|gb|EE093186.1|EE093186
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|351013783|gb|FQ433935.1|FQ433935
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110716791|gb|EE092082.1|EE092082
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110696430|gb|EE072550.1|EE072550
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|30130595|gb|CB915934.1|CB915934
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110701152|gb|EE078432.1|EE078432
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
EST: gi|110725494|gb|EE102063.1|EE102063
EST:     CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAT                         TTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC
genomic: CTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattc ... attcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA
                                              ttcttac  CT-rich tract
                          aactaactaataaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtattcaattgcccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtcaattcttacagTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA