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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaattccaaattcaaaatcttctccaaatagtatgcttttatttcaatatagaatcttcatttcctcataagcttgtgggaactgcagATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTGCTGGTGAAGAAACTGAAATTCACACCATCTTTCAGGCTTCGTCTTATTACCCGCACTCTAT

Basic information

species Vitis vinifera
transcript Vv01s0010g02520.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G127294_T01 (Zea mays), 3'ss of exon 4
--gttcaattccaaattcaaaatcttctccaaata-gtatgcttt---tatttcaatatagaat----cttcatttcctcataagc-ttgtgggaactgcagATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTGCTGGTGAAGAAACTGAAATTCACACCATCTTTCAGGCTTCGTCTTATTACCCGCACTCTAT
    |    || | ||   ||      | ||   | ||||| |||   ||| |||  || | ||    ||  || |  |  | ||| || |    ||  ||||||| |||||||||||||||||||||| | ||  || | ||||||| |||  |    |||   |||    | | ||| || || ||| |||| | |  ||
atcatagcctctacatcacaagatacatacacgcatgtatgttttccatatgtcatgatggtatagaactatatgtgatagtgagcatttttatgac--cagATATTTGCGATGCCAGTGTTTGACATGATAGAGGCAGTACTGGTGATGAAGTTTCGGTTCCGTCCAAGCCTGATGCTCCGCCTCATTTCCCGGAGTGCAT

upper sequence: Vv01s0010g02520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ10950 (Selaginella moellendorffii), 3'ss of exon 4
----gttcaattccaaattcaaaatcttctccaaatagtatgcttttatttcaatatagaatcttcatttcctcataagcttgtgggaactgcagATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTGCTGGTGAAGAAACTGAAATTCACACCATCTTTCAGGCTTCGTCTTATTACCCGCACTCTAT
    | | | |||    |||   |  |  | ||| ||     |||| |||     || ||   ||  ||||       | ||     |||   |||| |||||||||||||||||||| ||| |||||||  | ||||| |||||| |  | ||  | |||  | | |  ||||||||  |  | ||  | || |
gtaagctgagttctctcttctcgacttgtttcaagtaa-gctctttgattg----atcgaggttttgtttc-------gtttccttaaac---agATCTATGCGATGCCAGTGTTTGATATGCTGGAAACCGTTCTGGTCAAGAAATTTCACTTTCCTCCAGGTGTGATTCTTCGTCTCGTCGCTCGATCACTCT

upper sequence: Vv01s0010g02520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ25874 (Selaginella moellendorffii), 3'ss of exon 4
----gttcaattccaaattcaaaatcttctccaaatagtatgcttttatttcaatatagaatcttcatttcctcataagcttgtgggaactgcagATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTGCTGGTGAAGAAACTGAAATTCACACCATCTTTCAGGCTTCGTCTTATTACCCGCACTCTAT
    | | | |||    |||   |  |  | ||| ||     |||| |||     || ||   ||  ||||       | ||     |||   |||| |||||||||||||||||||| ||| |||||||  | ||||| |||||  |  | ||| | |||  | | |  ||||||||  |  | ||  | || |
gtaagctgagttctcccttctcgagttgtttcaagtaa-gctctttgattg----atcgaggttttgtttc-------gtttccttaaac---agATCTATGCGATGCCAGTGTTTGATATGCTGGAAACCGTTCTGGTCAAGAAGTTTCACTTCCCTCCAGGTGTGATTCTTCGTCTCGTCGCTCGATCACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttttatttcaatatagaatcttcatttcctcataagcttgtgggaactgcagATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTGCTGGTGAAGAAACTGAAATTCACACCATCTTTCAGGCTTCGTCTTATTACCCGCACTCTAT
     ttatttcaatatagaa  TA-rich tract