1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gccagtgttttcttggcaaccaacaaacatggggtgaatgtttgatgtgtattgctattcttgttggtgcatgacattctctttgttgaatcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAAGGCAACAAATGAGGTGTTGGAGAGATGGAACTTCAGCATTGAAACCGA
species | Vitis vinifera |
transcript | Vv01s0010g02430.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAACGAGCAEST: gi|349818528|gb|FQ403163.1|FQ403163
genomic: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAEST: gi|349818475|gb|FQ403110.1|FQ403110
genomic: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: TCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AAGGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAEST: gi|349818516|gb|FQ403151.1|FQ403151
genomic: TCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: AGAGGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAEST: gi|349818494|gb|FQ403129.1|FQ403129
genomic: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGTCTCAACTTTCGG AATGGCTAGAAGCTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAEST: gi|349818530|gb|FQ403165.1|FQ403165
genomic: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAEST: gi|349818538|gb|FQ403173.1|FQ403173
genomic: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAEST: gi|349818492|gb|FQ403127.1|FQ403127
genomic: AGATGAGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
EST: AGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGG AATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
genomic: AGGGTGTTAAATCGTTCATTGCTAACCTAACGGCTCAGCTTTCGGgtaaggatct ... tcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCA
tgtgtattgctattcttgttggtgcatgacattctctttgttgaatcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAAGGCAACAAATGAGGTGTTGGAGAGATGGAACTTCAGCATTGAAACCGA
tcttgttc CT-rich tract
tattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagtgttttcttggcaaccaacaaacatggggtgaatgtttgatgtgtattgctattcttgttggtgcatgacattctctttgttgaatcttgttcagAATGGCTAGAAACTGGAAAGCTACAGAGGGTGGTTCTTGTAATAATGAGCAAGGCAACAAATGAGGTGTTGGAGAGATGGAACTTCAGCATTGAAACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-ccagtgt
- - - - -ttcttgg
- - - - - - - - - -ccaacaa
- - - - - - - - - - - - - acatggg
- - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgac