Sequence
atgc intronic sequence ATGC exonic sequence...taaactattttctctgattaaagacacatttgattatgatatatgactttggttcttcatatgatgtcaactctttatgctaagggctactctttcctagGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G13980.1 (Glycine max), 3'ss of exon 3
taaactattttctctgattaaagacacatttgattatgatatatgacttt----ggttcttcatatgatgtcaactctttatgctaagggctactctttcct---agGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAG
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----acatcagctttcagtttatgtttttgtcaccgtgtca-atgactttaaaaggggtttctta-aatttgcactctt-atcctcacctttctttttccattgtagGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGGATTGAGAAGACAGCAGCGGCACTTGTTTCTGAACTCAGATTGATGTCAAGAGAA
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G09520.1 (Glycine max), 3'ss of exon 3
taaactattttctctgattaaagacacatttgattatgatatatgacttt----ggttcttcatatgatgtcaactctttatgctaagggctact-ctttcctagGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAG
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----acattagctttcggttaatgtttttgtcactatgtca-atggctttaaaaggggtttcttaaatttgcgctcttatccgctcctttctttttccattgtagGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGCATTGAGAAGACAGCAACAGCGCTTGTTTCTGAACTCAGATTGATGTCAAGAGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttggttcttcatatgatgtcaactctttatgctaagggctactctttcctagGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAG
ctactctttcct CT-rich tract
ttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaactattttctctgattaaagacacatttgattatgatatatgactttggttcttcatatgatgtcaactctttatgctaagggctactctttcctagGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAG
- - - - - - - - - - aagacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactct