Sequence
atgc intronic sequence ATGC exonic sequence...aaccatcctctcttggaagggcttaagatggcattttattgacatttgtgccgagttattggttcattaactgattctaatttttctgatttgcaaatagGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G06660.1 (Glycine max), 3'ss of exon 2
aaccatcctctcttggaagggcttaagatggcatttta---ttgacatt-tgtgccgagttattggttcattaa-ctgattctaatttttc--tgatttgcaaatagGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATG
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-------aagtttaaaagaaaattgtgttccttttttagcttatgcgttgtatttctgattatattttgactaatctaccttcaattgttccttgtaattatactagGTTCTGCATCACTGTGCTGATTCTATCAATATAAACAATAAGATTTGGAATATGTATTTGAAGGATCTCCTTCCAAGATTGGTAAAAGCGGGAGATGATG
upper sequence: Vv01s0010g00480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G12580.1 (Glycine max), 3'ss of exon 3
aaccatcctctcttggaagggcttaagatggcattttattgacatttgtgccgagttattgg---ttcattaactga--ttctaatttttctgatttgcaaa-tagGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATG
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-----gtcaataaaggaaaaccttgtt-tcttattcagcttatgtgttgtttatctgattggattttgactaatctaccttccattttcccttgtacgtatactagGTTCTGCGCCACTCGGCTGATTCCATCAATATAAACAATAAGATTTGGAATATCTATTTTAAGGATATCCTCCCAAGATTGGTAAAAGCAGGAGATGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgccgagttattggttcattaactgattctaatttttctgatttgcaaatagGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATG
taatttttctgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaccatcctctcttggaagggcttaagatggcattttattgacatttgtgccgagttattggttcattaactgattctaatttttctgatttgcaaatagGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATG
- ccatcct
- - - - -ctcttgg
- - - - - - - - - - - - - - -ggcattt
- - - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattaac