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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttattttaaaaaaataaaaaattatacaattgattttattatttccttttaaactgcataactagttgtcacatgcattcctgatggatgaattgcagAAGAATTGCAGATAGGCCTAGGGATCCTGCTAAGTGGAATGAGATTGCTGATGTTGTAGCGGCATTATCTATTCCGGTTATAGCAAATGGTGATGTCTTT

Basic information

species Vitis vinifera
transcript Vv00s2201g00010.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s2201g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g44890.1 (Oryza sativa), 3'ss of exon 5
-----ttttattttaaaaaaataaaaaattatacaattgattttattatttccttttaaactgcataactagttgtcacatgcattcctgatggatgaattgcagAAGAATTGCAGATAGGCCTAGGGATCCTGCTAAGTGGAATGAGATTGCTGATGTTGTAGCGGCATTATCTATTCCGGTTATAGCAAATGGTGATGTCTTT
     |  | |  || |  ||      ||| | ||||      || ||| || ||||    |   | | |          || ||||||  |  |     |||||||   |   ||| || || || ||||||||||||||| |||||||||| ||||||||  | ||| | || ||||| |||||||| ||||| ||||| |||
cagaataatgtcatatatcaactctccatttt-caatcttccctaatatgtctttttttgttaattgatttccctgatgttggattcctt-tacaca---tgcagAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTT

upper sequence: Vv00s2201g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G23820.3 (Glycine max), 3'ss of exon 5
-----ttttattttaaaaaaataaaaaattatacaattgattttattatttccttttaaactgcataactagttgtcacatgcattcctgatggatgaattgcagAAGAATTGCAGATAGGCCTAGGGATCCTGCTAAGTGGAATGAGATTGCTGATGTTGTAGCGGCATTATCTATTCCGGTTATAGCAAATGGTGATGTCTTT
      | | |  ||      |  ||  | ||  |||   |  ||||| |   |  | |    || |  |     |||| |   | | || ||    | || ||||| | |  |||||||||| || |||||||||||||||||||| || |||||||||||  | |||||||||||||| |||||||||||||||||||| |||
taattctctctcctatttctgttcaatttcatttaatcactaatattaatctttggttattaacacatgt-----tcacttttttccttgttgatctatttacagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGCAAATGGTGATGTTTTT

upper sequence: Vv00s2201g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G36840.1 (Glycine max), 3'ss of exon 5
---ttttattttaaaaaaataaaaaattatacaattgatt-ttattatttccttttaaactgcataactagttgtcacatgcattcctgatggatgaattgcagAAGAATTGCAGATAGGCCTAGGGATCCTGCTAAGTGGAATGAGATTGCTGATGTTGTAGCGGCATTATCTATTCCGGTTATAGCAAATGGTGATGTCTTT
   | ||  |   |     |    ||||  |   || ||   || ||||    |||    |   ||||   |  |||| |   | | || ||    | || ||||| | |  |||||||||| || |||||||||||||||||||| || |||||||||||  | |||||||||||||| ||||||| |||||||||||| |||
aattctttctcctattttctgttcaatttcat--ttaatcactagtattaatctttgg--ttattaacacatgctcacttttttccttgttgatctatttacagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGAAAATGGTGATGTTTTT

upper sequence: Vv00s2201g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G49640.2 (Arabidopsis thaliana), 3'ss of exon 5
ttttattttaaaaaaataaaaaattatacaattgattttattatttccttttaaactgcataact---agttgtcacatgcattcctgatggatgaattgcagAAGAATTGCAGATAGGCCTAGGGATCCTGCTAAGTGGAATGAGATTGCTGATGTTGTAGCGGCATTATCTATTCCGGTTATAGCAAATGGTGATGTCTTT
              |||| | |    |    ||  |||  |    | | ||||| |||  | | |   |||||  |  ||  | |    |   | || | ||| | ||||||||| ||||| || ||||||||||| ||| |||||||||| ||||| || || |||||||| ||||| || || |||||||| ||||| || 
------------gtaatatacaccactgttgttagtttgttctcattcctttaagctgttttaatcaaagttggtaattgattcctccttccttaaaatacagGAAAATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGCATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttttaaactgcataactagttgtcacatgcattcctgatggatgaattgcagAAGAATTGCAGATAGGCCTAGGGATCCTGCTAAGTGGAATGAGATTGCTGATGTTGTAGCGGCATTATCTATTCCGGTTATAGCAAATGGTGATGTCTTT
                                   tcctgat  putative branch site (score: 3)
     ttaaact  TA-rich tract