Sequence
atgc intronic sequence ATGC exonic sequence...aatctctgatattccttgttcatttacaatttaaataggacaccactttgcaagtttttcaatcatgcactgattgttttcttgatattaattgttgcagGTTGGATCTGTTACTGCCATATGTTTCACCTGCTTTCTTATAAGATGCTTTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2038g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G38920.2 (Glycine max), 3'ss of exon 8
--aatctctgatattccttgttcatttacaatttaaataggacaccactttgcaagtttttcaatcatgcac-tgattgttttcttgatattaattgttgcagGTTGGATCTGTTACTGCCATATGTTTCACCTGCTTTCTTATAAGATGCTTTGTG
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ttcttctgttacattccaaaactataacaaaatgaaattgaaaaacaattgctta---tatcaatattgcttgtatttatgtaacacaggctgggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG
upper sequence: Vv00s2038g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 8
--aatctctgatattccttgttcatttacaatttaaataggacaccactttgcaagtttttcaatcatgcactgattgttttcttgatattaattgttgcagGTTGGATCTGTTACTGCCATATGTTTCACCTGCTTTCTTATAAGATGCTTTGTG
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ttcttctgttatattccaaaagtataacaagatgaaattgaaaaagaatt-gcttatatcaatattacttg-tatttatgtaacaagggctgggtattgcagGTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG
upper sequence: Vv00s2038g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G21790.1 (Arabidopsis thaliana), 3'ss of exon 8
------aatctctgatattccttgttcatttacaatttaaataggacaccactttgcaagtttttcaatcatgcactgattgtttt-----cttgatattaattgttgcagGTTGGATCTGTTACTGCCATATGTTTCACCTGCTTTCTTATAAGATGCTTTGTG
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gtacttagattcatatatc---tgtatgtgaataatttgtcttatatagttccata-aaactttgaacccaaacatttctaccttcaaatattcgtctcttttcattgcagGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgcaagtttttcaatcatgcactgattgttttcttgatattaattgttgcagGTTGGATCTGTTACTGCCATATGTTTCACCTGCTTTCTTATAAGATGCTTTGTG
tattaat putative branch site (score: 2)
attgttttcttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatctctgatattccttgttcatttacaatttaaataggacaccactttgcaagtttttcaatcatgcactgattgttttcttgatattaattgttgcagGTTGGATCTGTTACTGCCATATGTTTCACCTGCTTTCTTATAAGATGCTTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - -ttccttg
- - - - - - - - - - catttac
- - - - - - - - - - - - - - - - aaatagg
- - - - - - - - - - - - - - - - - - - -acaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcac