Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgcatactattccagtaacctgggcatcagccactctgtaataaaaattatggataaaatttaagagtactaattcactattccttttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGGGACATGGCTAACCCACCGAAGGGTCCTGTAGGCCTGAGGTTCCAAGTGA

Basic information

species Vitis vinifera
transcript Vv00s1455g00010.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110357136|gb|EC920473.1|EC920473
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|32248045|gb|CD713864.1|CD713864
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|110423078|gb|EC989414.1|EC989414
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|110390335|gb|EC955237.1|EC955237
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|32265245|gb|CD716834.1|CD716834
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|32271290|gb|CD720449.1|CD720449
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|32247387|gb|CD713206.1|CD713206
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|32249570|gb|CD715389.1|CD715389
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
EST: gi|110357223|gb|EC920610.1|EC920610
EST:     TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAG                         GAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG
genomic: TGTTATACCAAGCTGGCCTAAGCGACATCACAGCAGTGGACATATGGCAGgcacgcatac ... ttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaattatggataaaatttaagagtactaattcactattccttttgggttcagGAGGATTGCCAGGAATGGAAGGGCATGAGGAAGAGCTATGGCGCAGTGTGGGACATGGCTAACCCACCGAAGGGTCCTGTAGGCCTGAGGTTCCAAGTGA
                          tactaat  putative branch site (score: 1)
                                ttcactattcctttt  CT-rich tract
            ataaaatttaagagta  TA-rich tract