Sequence
atgc intronic sequence ATGC exonic sequence...cataaatgtgtttgttttgggaactggatttactccattcagtaatatctataattcgttatgatatttatttgaaatttcttttccccaacttctgtagTCCTACTGGAAAGGTTATCTTGCACGGAAAGAGTCAAGGGGGCAGCTAGTGGATTTGCGTTTGAGAGTGCAAAAGTCTGCTACAAGTGTAGATGATGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1404g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G01810.1 (Glycine max), 3'ss of exon 14
cataaatgtgtttgttttgggaactggatttac-tccattcagtaatatctataatt-cgttatgatatttatttgaaatttcttttccccaacttctgtagTCCTACTGGAAAGGTTATCTTGCACGGAAAGAGTCAAGGGGGCAGCTAGTGGATTTGCGTTTGAGAGTGCAAAAGTCTGCTACAAGTGTAGATGATGGCA
||| | | ||| || | | || || | | | | | ||| || | || | | || || | | | ||| | ||||| |||||||| ||||||||||||| |||| ||| |||||||||| | ||| || |||||||||||||||| |||| |||||||||| || ||| ||||| |||
-gtaattattttt-ttgccaaattttcatctatgtttactgtctttttactaggttttctttttcttcttaatcttccttctttttatctgaacttttgtagTCCCACTGGAAAGGTTACCTTGTACGTAAAGAGTCAAAAGAACAGTTATTGGATTTGCGTTTGAGGATGCAGAAGTCTGCTAGAAATGTGGATGACAGCA
upper sequence: Vv00s1404g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G38930.1 (Glycine max), 3'ss of exon 16
cataaatgtgtttgttttgggaactggatttactccattcagtaatatctataattcgttatgatatttatttgaaatttcttttccccaacttctgtagTCCTACTGGAAAGGTTATCTTGCACGGAAAGAGTCAAGGGGGCAGCTAGTGGATTTGCGTTTGAGAGTGCAAAAGTCTGCTACAAGTGTAGATGATGGCA---------------------------------------------
|||| |||||||| |||||| ||| || ||| || |||||||||| |||||| ||||||||||||| | || ||| ||||| |||
-----------------------------------------------------------------------------------------------------------------gttaccttgcacgtaaagagccaaaggaacagTTATTGGATTTGCGCTTGAGAATGCAAAAGTCTGCCAGAAATGTGGATGACAGCAAGCGTCTCATAAACCGACTCTTGGCAGCGCTTTCAGAGCTACTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatctataattcgttatgatatttatttgaaatttcttttccccaacttctgtagTCCTACTGGAAAGGTTATCTTGCACGGAAAGAGTCAAGGGGGCAGCTAGTGGATTTGCGTTTGAGAGTGCAAAAGTCTGCTACAAGTGTAGATGATGGCA
tttcttttccccaact CT-rich tract
ataattcgttatgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataaatgtgtttgttttgggaactggatttactccattcagtaatatctataattcgttatgatatttatttgaaatttcttttccccaacttctgtagTCCTACTGGAAAGGTTATCTTGCACGGAAAGAGTCAAGGGGGCAGCTAGTGGATTTGCGTTTGAGAGTGCAAAAGTCTGCTACAAGTGTAGATGATGGCA
- - - - - - - ttttggg
- - - - - - - - - - - - - - - - - ccattca