Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttctaccttctctttcttagtagattgtttgaactggcataacaatccagataggaactccccgtatacaagattctataacaatcaatattgctaatttgcatccttgtcaatttccactatgaccaatatagTTCATCGGAAGAACTCACAATGCACGACATAGATGCGGTGCAAAGGATTGTGGAATACTTCTTGATGCATGAGCAGCAGCAACCGCACCAACACAAGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1395g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14410.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------------gtaagttttctaccttctctttcttagtagattgtttgaactggcataacaatccagataggaactccccgtatacaagattcta-taacaatcaatattgctaatttgcatccttgtcaatttccactatgaccaatatagTTCATCGGAAGAACTCACAATGCACGACATAGATGCGGTGCAAAGGATTGTGGAATACTTCTTGATGCATGAGCAGCAGCAACCGCACCAACACAAGTCT
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gtgagtatgttacaattctccttttttttcgcacattggaattggcattaatgccaaaggtcaaatttaactccacagccctctaaaccaattttttttgttaaaaaaaaaaacccaagagttatgaaaacgactaatgacactaatgtctatc--ttttgtcttttcttattcttttc--cttcattagTTGCATGACTAATTCATCTGAAGAATGCACCATGCTAGACATAGATGTAGTGCAACGAATTGTGGAATACTTCTTGATGCATGAACAACAGCAGATTCAA------------
upper sequence: Vv00s1395g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G31220.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------gtaagttttctaccttctctttcttagtagattgtttgaactggcataacaatccagataggaactccccgtatacaagattcta-taacaatcaatattgctaatttgcatccttgtcaatttccactatgaccaatatagTTCATCGGAAGAACTCACAATGCACGACATAGATGCGGTGCAAAGGATTGTGGAATACTTCTTGATGCATGAGCAGCAGCAACCGCACCAACACAAGTCT
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gtgagtatgtaacaattctccttttttttcacatgttggaattggcattaatgccaaggtcaaatttaacttcacagccctctaaaccaattttttttttgaaaaaaaagaacccaagagttatgaaaacgactaatgacactaatatctatc--ttttgtctttttctattcttttccctcattagtagCATGACTAT--TTCATCTGAAGAATGCACCATGCTAGACATAGATGTAGTGCAACGAATTGTGGAATACTTCTTGATGCATGAACAACAGCAGATTCAACAG--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaatcaatattgctaatttgcatccttgtcaatttccactatgaccaatatagTTCATCGGAAGAACTCACAATGCACGACATAGATGCGGTGCAAAGGATTGTGGAATACTTCTTGATGCATGAGCAGCAGCAACCGCACCAACACAAGTCT
tgctaat putative branch site (score: 2)
aatattgctaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttttctaccttctctttcttagtagattgtttgaactggcataacaatccagataggaactccccgtatacaagattctataacaatcaatattgctaatttgcatccttgtcaatttccactatgaccaatatagTTCATCGGAAGAACTCACAATGCACGACATAGATGCGGTGCAAAGGATTGTGGAATACTTCTTGATGCATGAGCAGCAGCAACCGCACCAACACAAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG