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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggagctgttgcatggtgtccacttagaattatttaagttctttttatagtttcctattttacttaaagtttatgccgtgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC

Basic information

species Vitis vinifera
transcript Vv00s0805g00020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtggagctgttgcatggtgtccacttagaattatttaagttctttttatagtttcctattttacttaaagtttatgccgtgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC
                   | |    |   | | | |||| |  |  | |  |||||||     ||| | |   ||| | |        ||  |||      | | |||||  | |        |||||  ||| |||||||  ||||||||||||||||||||||| |||||||| ||||||||  | || ||  | ||||||||||||||||||||| |  ||||
-------------------gtttgtgaaaaaaagtgatttcaactactgtcttagtttctg--cttattgaggatttcttct-------taactaaaggttgtggctttttcaccta-------tagATAATAACAAATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCAGATCGTCCTGGACTGAGATTTACTGTTCC

upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtggagctgttgcatggtgtccacttagaattatttaagttctttttatagtttcctattttacttaaagtttatgccgtgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC
|| |||| | ||  | || | |          |||  |||  || |   ||| |     ||||   |  |  | ||||  | |     |    |||      | | |||| |||      | |||||||  ||| |||||||  ||||| ||||||||||| ||||| |||||||| ||||| ||  | || ||  ||||||||||||||||||||||| |  ||||
gttagtgaaacttattcaagat-------cgaaatattttctgtacaacttagatgcgactatgagagatcta-tttaaactgcttacg-gcctaaagcttgttgcttttcttc-----aattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttatgccgtgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC
                  atttaac  putative branch site (score: 3)
                 tatttaacatgaat  TA-rich tract