Sequence
atgc intronic sequence ATGC exonic sequence...ggcatccacatttagtgcttacatgaattcaaatctatccatatattatccacccaaacctacagtattctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G38110.1 (Glycine max), 3'ss of exon 3
ggcatccacatttagtgcttacatgaattcaaatctatccat---atattatccacccaaacctacagt--attctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
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tgtattttctctcatgcactctatgt-tttatgtttgcttgtggaacaagacgtacttagtgctaaattttattttaaact----atgaaacatacaatatgcagACCGGCAATCATTTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCT
upper sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G02040.1 (Glycine max), 3'ss of exon 3
--ggcatccacatttagtgcttacatgaattcaaatctatcca-tatattatccacccaaacctacagtattctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
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gaataggacgtgcttagtgtttaattttattttaatctatgaaacataaaatcaaattgtaatcattaaattcaaacct---tagcaagctgttataatgcagACCGGCAATCATTTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCT
upper sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14390.1 (Glycine max), 3'ss of exon 3
ggcatccacatttagtgcttacatgaattcaaatctatc-catatatta-----tccacccaaacctacagtattctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
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--catgtatatttggaagt-gctttagttctcatttttcacaagtaataaaaattgaacagaaatttataattatttaacctg---ggtaagctgttcttatgcagACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTGTTGGTTGGAAACAAAACTGATCT
upper sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G31200.1 (Glycine max), 3'ss of exon 3
ggcatccacatttagtgcttacatgaattcaaatctatc-catatatt----atccacccaaacctacagtattctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
|||| |||| | | | | | ||| || | || || || | || || ||| || | | | | | || ||| | | |||||||| ||||||||||||||||||| ||||||| ||||||| || ||||||||||| |||| |||||| |||||||| | ||||| || ||||| |||||
-gcatgtgtatttggaagt-gctttagttctcatttttcacaactaatcaaaattaacagaaatttataattatttaacctg---ggtaaggtgttcttatgcagACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTATTGGTTGGAAACAAAACTGATCT
upper sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------ggcatccacatttagtgctt-acatg-aattcaaatctatccatatattatccacccaaacc-tacagtattctgaattgttcattaaatt--ttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
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gtaaggcttcttctgtgagaacttttcagctttaccatcaaagtttcctcttttgtgtacaatctacacaggatccttctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatagATAGGCAGTCATTCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatccacccaaacctacagtattctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
ttttcact CT-rich tract
aattgttcattaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggcatccacatttagtgcttacatgaattcaaatctatccatatattatccacccaaacctacagtattctgaattgttcattaaattttcactatgcagATCGGCAATCATTTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCT
- catccac
- - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - ctatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccta