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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgagtatgctgtggcggtattactgtttttgtaacttctttggtgattctttagtttataatagatttctgaacttgaatttttatagGCTGCCTTGGGCACAATGGATGGCATCATTGATACAGTCTCTGCAGTTCACCCTCTTCTTCCTTTGATTGATTTGCTGAAATCTCATGGGAAGCTAGTTA

Basic information

species Vitis vinifera
transcript Vv00s0615g00020.t01
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctttggtgattctttagtttataatagatttctgaacttgaatttttatagGCTGCCTTGGGCACAATGGATGGCATCATTGATACAGTCTCTGCAGTTCACCCTCTTCTTCCTTTGATTGATTTGCTGAAATCTCATGGGAAGCTAGTTA
 ttgtaac  putative branch site (score: 2)
                                              tttttat  putative PPT
            attctttagtttataa  TA-rich tract