1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttcttagaaagggttcttactttcttttaggattcaatgtccttcttaacatacctgtttctctgggaagtgatatgaacatatggcattacacttgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTGTGGGATCTTGGAGGTCAGCCTAGGTTTCGCACTATGTGGGAGAGATACT
species | Vitis vinifera |
transcript | Vv00s0601g00030.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACTGGTGGATATAGTGAAGACATGATTCCTACG GTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTGEST: gi|30256144|gb|CB971987.1|CB971987
genomic: CAACTGGTGGATATAGTGAAGACATGATTCCTACGgtgagttttc ... tgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
EST: ACTGGTGGATATAGTGAAGACATGATTCCTACG GTAGGATTCAACATGAGGAAAGTAACTAAAGGGAACGTCACGATAAAATTGEST: gi|110703370|gb|EE080157.1|EE080157
genomic: ACTGGTGGATATAGTGAAGACATGATTCCTACGgtgagttttc ... tgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
EST: ACTGGTGGATATAGTGAAGACATGATTCCTACG GTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTGEST: gi|110379513|gb|EC944712.1|EC944712
genomic: ACTGGTGGATATAGTGAAGACATGATTCCTACGgtgagttttc ... tgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
EST: ACTGGTGGATATAGTGAAGACATGATTCCTACG GTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTGEST: gi|30256212|gb|CB972055.1|CB972055
genomic: ACTGGTGGATATAGTGAAGACATGATTCCTACGgtgagttttc ... tgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
EST: ACTGGTGGATATAGTGAAGACATGATTCCTACG GTAGGATTCAACATGAGGAAAGTAACTAAAGGGAACGTCACGATAAAATTGEST: gi|33407863|gb|CF213490.1|CF213490
genomic: ACTGGTGGATATAGTGAAGACATGATTCCTACGgtgagttttc ... tgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
EST: ACTGGTGGATATAGTGAAGACATGATTCCTACG GTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
genomic: ACTGGTGGATATAGTGAAGACATGATTCCTACGgtgagttttc ... tgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTG
atacctgtttctctgggaagtgatatgaacatatggcattacacttgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTGTGGGATCTTGGAGGTCAGCCTAGGTTTCGCACTATGTGGGAGAGATACT
acttgat putative branch site (score: 5)
tcttc CT-rich tract
atatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcttagaaagggttcttactttcttttaggattcaatgtccttcttaacatacctgtttctctgggaagtgatatgaacatatggcattacacttgatcttcagGTAGGATTCAACATGAGGAAAGTAACTAAAGGGAATGTCACGATAAAATTGTGGGATCTTGGAGGTCAGCCTAGGTTTCGCACTATGTGGGAGAGATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG