1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaataaaaaaagttgatatcctggtaaggaatcatccagtgacctatcaccttgttagttcttgtagtaagtgtttctgaccatatgttcttgttcacagGTATGATTCTAAATGTAAAGGAGCTTCAATGGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTT
species | Vitis vinifera |
transcript | Vv00s0587g00010.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
atcaccttgttagttcttgtagtaagtgtttctgaccatatgttcttgttcacagGTATGATTCTAAATGTAAAGGAGCTTCAATGGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTT
ttctgac putative branch site (score: 2)
ttcttgttc putative PPT
atatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaataaaaaaagttgatatcctggtaaggaatcatccagtgacctatcaccttgttagttcttgtagtaagtgtttctgaccatatgttcttgttcacagGTATGATTCTAAATGTAAAGGAGCTTCAATGGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - aaaaaaa
- - - - - - - - - - - - taaggaa
- - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacca