Sequence
atgc intronic sequence ATGC exonic sequencegtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os05g05200.1 (Oryza sativa), 3'ss of exon 12
gtatgttcattgaaagtgtataattt---tcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttt-tcctcta---taattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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-------------------gtaatttgaacatttaaaatcaatattgattcatcatgcaccctgcatgctttaccttttgatacaag------ggaa---cattgtcaataaaac---aactgtgttctcatatccgcactgttttatgtaatgttttttgtgttttatgctgagtgtttcattgcagGTAGGAGGAGTTGAGACGCCTGAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAACAGAT
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G042981_T01 (Zea mays), 3'ss of exon 12
gtatgttcattgaaagtgtataattttcttttattttgttttta-attaaat-ctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaa-cactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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gtaattccatattaaattttgcattcaataacactctgatctaatatcgaatgttttatcatgtcttgaaaattattt------atctaatagatagcattataggaacacaactttgttctgatctcagcatctgtttcatgaatattcttgacatgtattaaagctaaacacatcattgcagGTTGGAGGAGTCGAGACTCCTGAAAACATGCCAAGGTGTATAAATAATTGCCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAATAAAT
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 12
gtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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------------------------------------------------------------------------------------------gtatgtttcttgctcgttaagcatatggcataaat----gtccaagtacatatttgaagaaagtcgttactttg-aatcatatg-ctgtagATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 13
gtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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----------------------------------------------------------------------------------------------gtatgttacttgctcgttaagcatatagcataaatgttcaagtacatatttgaagaaagtcagtactttg-aatcatatg-ttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
aatttttttcctctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC