Sequence
atgc intronic sequence ATGC exonic sequence...aattagattatacttatttctttgctgtatttagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------------------------aattagattatacttatttctt----tgctgtatttagctataaatatcttcaattcagtacaaactt-----atggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
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gttattcatctcaatagttaatggagtatatacaactgtttatttattaactgtgtaaaatacactaacttccatgttgtatttttaattaagattgtctcaccttagctatatgaagtgttttatttacccaaaattatttcctttctataattcactttatacatcctcattaccaatttctacctttt-tttttccagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATA
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G39070.1 (Glycine max), 3'ss of exon 5
aattagattatacttatttctttgctgtatttagctataaatatcttcaatt---cagtacaaacttatggttttttcctctt-ccttctttccat-tcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
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-----aattttcctttttataatgttttatttatccaaaatcattttcctttttctagttcactttctttatatatcctgattacccaatttctgcctttttcagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATCGTGCAGTATTATGGTAGCGAAATA
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G10050.1 (Glycine max), 3'ss of exon 2
aattagattatacttatttctttgctgtatt-tagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
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tatatgtatgtatatattttatccttccccaataattttgaagatatgttatttcttatat-cttctttatccttcttattaatttattctttttctccagGAAATTAAAGTTCTTAGCAATCTAAAACATTCAAACATCGTACAGTATTATGGCAGTGAAATA
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 4
-aattagattatacttatttctttgctgtatt-tagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
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ctgcttggctatatatatttatc-gttccataatagttttgaagatatgctattttctatatcctctttatcctt-cttattagtttattctttttctccagGAAATTAAAGTTCTTAGCAATCTAAAACATTCAAACATCGTACAGTATTATGGCAGTGAAATA
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 3'ss of exon 3
-----aattagattatacttatttctttgctgtatttagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattc-ttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
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gtaacctccaggagagaca-attctcccagtgctctcagtcacggctgtgtttggtt--gttcg--tttgttatatatcttatagctttctatttatttatttcagGAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110689010|gb|EE067915.1|EE067915EST: TGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAG GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTT
genomic: TGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctcc ... attcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
cttatggttttttcct CT-rich tract
aaacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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aattagattatacttatttctttgctgtatttagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
- - - - - - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - ataaata
- - - - - - - - - - - - - - - - - - - - - - - -caattca