1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcacggttcataaaggaaaactatttgtttaacattatgcatgtagattataaggattgattatggtggccatcagatgaattcttgatgatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAACTCAATCGCTACATACCCACTGCAGCAGCCTTCGGGGGTATGTGCATCG
species | Vitis vinifera |
transcript | Vv00s0551g00030.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|30137500|gb|CB922838.1|CB922838
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|110693126|gb|EE069083.1|EE069083
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|110383871|gb|EC948274.1|EC948274
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|30128076|gb|CB913415.1|CB913415
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|71873239|gb|DT022294.1|DT022294
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|30127111|gb|CB912450.1|CB912450
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|71882627|gb|DT031682.1|DT031682
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|110427049|gb|EC993480.1|EC993480
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|77580759|gb|DV219287.1|DV219287
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|110369453|gb|EC933613.1|EC933613
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAAEST: gi|34549150|gb|CF517382.1|CF517382
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
EST: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAG GAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
genomic: GGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattc ... gatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAA
agattataaggattgattatggtggccatcagatgaattcttgatgatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAACTCAATCGCTACATACCCACTGCAGCAGCCTTCGGGGGTATGTGCATCG
tcttgat putative branch site (score: 4)
tttttc putative PPT
attgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacggttcataaaggaaaactatttgtttaacattatgcatgtagattataaggattgattatggtggccatcagatgaattcttgatgatttttcagGAGCAACAAATGGTGATGCCTGGGCACCGGGAGGCTAACTTGCAGAAAGAACTCAATCGCTACATACCCACTGCAGCAGCCTTCGGGGGTATGTGCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - ataagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatca