1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cccgtggatgttccatattaccatgtgttatctttaagtatagtttattgttcagttttttatcatcttgccaacatgttacgttcaattttccgtccagTGTACGTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGACTATTAAGGGGGTTCAATACAAAACGAAGGCTGGTCAAGAACTTAAAGCA
species | Vitis vinifera |
transcript | Vv00s0525g00020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGGTCGTTTCATACAGAGGATGAGAGAAAAAGCTACTTCTCTTTCCAA TGTACTTATGGAGCAAGGAACAGTAACATCACTCCTCGAAGAAAATGGGACEST: gi|110357257|gb|EC920671.1|EC920671
genomic: AATGGTCGTTTCATACAGAGGATGAGAGAAAAAGCTGCTTCTCTTTCCAAgtattctttc ... ttccgtccagTGTACGTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGAC
EST: AATGGTCGTTTCATACAGAGGATGAGAGAAAAAGCTACTTCTCTTTCCAA TGTACTTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGACEST: gi|161718467|gb|FC064799.1|FC064799
genomic: AATGGTCGTTTCATACAGAGGATGAGAGAAAAAGCTGCTTCTCTTTCCAAgtattctttc ... ttccgtccagTGTACGTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGAC
EST: AATGGTCGTTTCATACAGAGGATGAGAGAAAAAGCTACTTCTCTTTC-AA TGTACTTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGG-AC
genomic: AATGGTCGTTTCATACAGAGGATGAGAGAAAAAGCTGCTTCTCTTTCCAAgtattctttc ... ttccgtccagTGTACGTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGAC
tattgttcagttttttatcatcttgccaacatgttacgttcaattttccgtccagTGTACGTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGACTATTAAGGGGGTTCAATACAAAACGAAGGCTGGTCAAGAACTTAAAGCA
ttttccgtcc CT-rich tract
ttttttatcatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccgtggatgttccatattaccatgtgttatctttaagtatagtttattgttcagttttttatcatcttgccaacatgttacgttcaattttccgtccagTGTACGTATGGAGCAAGGAACAGTAACATCACTCCTTGAAGAAAATGGGACTATTAAGGGGGTTCAATACAAAACGAAGGCTGGTCAAGAACTTAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -gtggatg
- - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaaca