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...caaatgagcacaaaaacaaaataagacttatatttcttgatttgcaattatattcttcaatccataatatcactctaaccaatgtctgcgggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCAGCATGATCTTCTCAGGGATCTAGCCATTTATCAGAGCAACCAGGAGCCC
species | Vitis vinifera |
transcript | Vv00s0487g00030.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAG GAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCAEST: gi|351013858|gb|FQ434010.1|FQ434010
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCA
EST: AACCTTCAGAATCTCCGCTCTCAAAATCTGCTTAATCTTGTGGTCACAAG GAATGATGCAAATGAAATTGGTTGGTGCTACA-GGATGCEST: gi|351014158|gb|FQ434747.1|FQ434747
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGC
EST: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAG GAATGATGCCAATGAGATTGGTTGGTGCTACAAGGATGCCTTEST: gi|351014892|gb|FQ438092.1|FQ438092
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTT
EST: AACCTTCAGAATCTCTGCTCTCAAAATCTGCTTAATCTTGTGGTCACAAG GAATGATGCAAATGAGATT
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATT
aattatattcttcaatccataatatcactctaaccaatgtctgcgggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCAGCATGATCTTCTCAGGGATCTAGCCATTTATCAGAGCAACCAGGAGCCC
ctctaac putative branch site (score: 2)
ataatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatgagcacaaaaacaaaataagacttatatttcttgatttgcaattatattcttcaatccataatatcactctaaccaatgtctgcgggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCAGCATGATCTTCTCAGGGATCTAGCCATTTATCAGAGCAACCAGGAGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
-aaatgag
- - - - -acaaaaa
- - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgc