Sequence
atgc intronic sequence ATGC exonic sequence...caactgattatcttttaataggatactggtttggggaaagtagagtccagtgataagattcttaatttttaaattgtcttcttttgctactaaatggaagGAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0475g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G12930.2 (Glycine max), 3'ss of exon 4
caactgattatcttttaataggatactggtttggggaaagtagagtccagtga--taagattcttaatttttaaattgtcttcttttg--ctactaaatggaagGAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGA
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-------------ctaaattagaaaaaagtttgccagaacttcagtaatgccaactaagcttttatgttataatcttggcttcaactgacttcttttatggaaggaatatcagGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA
upper sequence: Vv00s0475g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34050.2 (Glycine max), 3'ss of exon 3
caactgattatcttttaatag-gatactggtttggggaaagtagagtccagtgataagattcttaatttttaaattgtcttcttttgctactaaatggaagGAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGA
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--gccaaa-atcatacactagcaatactgttt---ataatgttaacctttttgtaatgatc--taaacttcatctcacttgttgaaaaaactg--tgcaaggaatgtcagCTTCATATCTTCAAGAAAGCCCTGGTACTGATAACTCTTCTCCAAAGTTACCAGCTTCTGATGCTAACGA
upper sequence: Vv00s0475g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34050.1 (Glycine max), 3'ss of exon 3
------caactgattatcttttaatag-gatactggtttggggaaagtagagtccagtgataagattcttaatttttaaattgtcttcttttgctactaaatggaagGAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGA
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taaaacagggccaaaatcatacactagcaatactgttt---ataatgttaacctttttgtaatgatc--taaacttcatctcacttgttgaaaaaactg--tgcaagGAATGTCAGCTTCATATCTTCAAGAAAGCCCTGGTACTGATAACTCTTCTCCAAAGTTACCAGCTTCTGATGCTAACGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccagtgataagattcttaatttttaaattgtcttcttttgctactaaatggaagGAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGA
tactaaa putative branch site (score: 1)
tcttcttttgctact CT-rich tract
ataagattcttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caactgattatcttttaataggatactggtttggggaaagtagagtccagtgataagattcttaatttttaaattgtcttcttttgctactaaatggaagGAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGA
- - - - - - - - aatagga
- - - - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - -gaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - -gataaga