Sequence
atgc intronic sequence ATGC exonic sequencegtaactgctgagtccacttttaacaagctgtggaaaatattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G03800.1 (Glycine max), 3'ss of exon 5
gtaactgctgagtccacttttaacaagctgtggaaa-atattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
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gtaattgccaaatttagtcatcgaagtttctggtgttagattcagaggcaaattaactaattatttgtacaatttga--agGTTTCATCGTCCAGCTGCGGAGCTTGGATGATCACTTGCCTCTTCCAGGCATAACTATTGGTGATATTGGGATGAAATTTGGAAATGCAGCTTATAACAC
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G14990.1 (Glycine max), 3'ss of exon 4
gtaactgctgagtccacttttaacaagctgtggaaa-atattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
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gtaattgccaaatttagtcatcgaagtttctggtgttagattcagaggcaaattaactaattatttgtacaatttga--agGTTTCATCGTCCAGCTGCGGAGCTTGGATGATCACTTGCCTCTTCCAGGCATAACTATTGGTGATATTGGGATGAAATTTGGAAATGCAGCATATAACAC
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G04940.1 (Glycine max), 3'ss of exon 5
gtaactgctgagtccacttttaacaagctgtggaaa-atattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
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gtagttacatactttaaacaccctaaattctgctattacattcagacttaaattaatta-acattatgctcaatttgt-agGTTTCATTGTCCAGCTGCGGAGCCTGGATGATCACTTACCTCTTCCAGGCATAACTGTTGGTGATATTGGAATGAAATTTGGAAATGGAGCATATAACTC
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G41600.1 (Glycine max), 3'ss of exon 5
gtaactgctgagtccacttttaacaagctgtggaaa-atattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
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gtaattgccaaatttagtcatctaagtttctggtgttagattcagaggcaagttaacta-attatttgcctatttga--agGTTTCATTGTCCAGCTGCGGAGCTTGGATGATCACTTGCCTCTTTCAGGCATAACTATTGGTGATATTGGGATGAAATTTGGAAATGCAGCATATAACAC
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G15320.1 (Glycine max), 3'ss of exon 6
-------gtaactgctgagtccacttttaacaagctgtggaaa-atattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTG----CGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
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gtgcatggtagttacatactttaaacacccaaagttctgctattatattcagactaaaattaatta-acattatgctcaatttgg-agGTTTCATTGTCCAGCTGTGAGCGGAGCTTGGATGATCACTTACCTCTTCCAGGCATAACTGTTGGCGATATTGGAATGAAATTTGGAAATGGAGCATATA----
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G35690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaac-tgctgagtccacttttaacaagctgtggaaaatattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
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gtaaggcactagaacgatttcttattcatttttttaataatcatcagtagtattgagtaacaagatttttctgtttttcagGATTCATCGTGCAGCTGCGTAGTTTGGATGATCATTCTCCTCTTCCGGGTATAACCGTTGGTGATATCGGAATGAAGTTTGGAAACGGGGCATATAACTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863239|gb|DT012294.1|DT012294EST: TGTTCTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG GTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCA
genomic: TGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctg ... actttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agctgtggaaaatattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
tttcacttt CT-rich tract
aaaatattctatatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgctgagtccacttttaacaagctgtggaaaatattctatatcatattatttatatgacaatttcactttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCATAACTATCGGTGATATTGGTATGAAATTTGGAAATGGAGGATACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT