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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtcttatgttattgcactttttgctttatctcacgtatgaatcaattagtgccctaacttttaatgtctgattcagGTGATTTCATCCCTGACTGCCTCTCTAAGGTTTGATGGTGCCCTAAACGTGGATGTGACTGAATTCCAGACTAACCTGGTTCCATACCCCAGGATCCACT

Basic information

species Vitis vinifera
transcript Vv00s0373g00010.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0373g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G04750.1 (Glycine max), 3'ss of exon 3
---------gtatttgtcttatgtt--attgcactttttgctttatctcacg----tatga-at-caattagtgcc-ctaacttttaatgtctgattcagGTGATTTCATCCCTGACTGCCTCTCTAAGGTTTGATGGTGCCCTAAACGTGGATGTGACTGAATTCCAGACTAACCTGGTTCCATACCCCAGGATCCACT
         |||    | |   | |  |    | ||  || |||||    ||    ||||| ||   ||   |    ||   || | ||      |||||||||| ||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||
gacaaaagagtaaaactttagggatgaaaaaaaattgatggtttattatccggttttatgacatgtgatcgatatggcttctttatgatcatattttcagGTGATATCATCACTGACTGCATCTCTGAGATTTGATGGTGCCCTGAATGTGGATGTTACTGAGTTCCAGACTAACCTGGTACCATATCCGAGGATTCACT

upper sequence: Vv00s0373g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G40550.1 (Glycine max), 3'ss of exon 3
--------------gtatttgtcttatgttattgcactttttgctttatc-tcacgtatgaatcaattagtgccctaactttt-----aatgtctgattcagGTGATTTCATCCCTGACTGCCTCTCTAAGGTTTGATGGTGCCCTAAACGTGGATGTGACTGAATTCCAGACTAACCTGGTTCCATACCCCAGGATCCACT
                | |     | |  |  || | ||  || || ||  ||  || | |    |   |||  || |||||      |   | |  |||||||||| ||||| |||||||| ||||| || |||||||||||| | || |||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||
ctatttaagagaaaagagtaaaaatttagtgatgaaattgatggttcattatcgggtttta--tgacatgtgatctgactttcttatcatcatatttttcagGTGATATCATCACTGACTGCATCTCTGAGATTTGATGGTGCCTTGAATGTGGATGTTACTGAGTTCCAGACTAACCTGGTACCATATCCGAGGATTCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttatctcacgtatgaatcaattagtgccctaacttttaatgtctgattcagGTGATTTCATCCCTGACTGCCTCTCTAAGGTTTGATGGTGCCCTAAACGTGGATGTGACTGAATTCCAGACTAACCTGGTTCCATACCCCAGGATCCACT
                                 taacttttaat  TA-rich tract