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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctgagtactgaccctttggactttttttttttttgtacttagGCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGTCAGAAACGTCAGGGTTCCCCACG

Basic information

species Vitis vinifera
transcript Vv00s0370g00030.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29784996|gb|CB341604.2|CB341604
EST:     AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG                         GCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT
genomic: AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactc ... ttgtacttagGCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT
EST: gi|161708801|gb|FC060073.1|FC060073
EST:     AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG                         GCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT
genomic: AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactc ... ttgtacttagGCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttacttttttctgagtactgaccctttggactttttttttttttgtacttagGCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGTCAGAAACGTCAGGGTTCCCCACG
                  tactgac  putative branch site (score: 1)
                        ccctttggactttttt  CT-rich tract
                                actttttttttttttg  TA-rich tract