1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgctactatagatggtcctatatgaacttgttaagcatgctatattgttattagtaatgtaattcaaggaattctaaacagttcattcattctttgcagGTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTGTGGCAACTAACAGGCACATGT
species | Vitis vinifera |
transcript | Vv00s0349g00020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGTGGCATTCTGATCTACTTGGTTGTTGTTCAGAACCTTCTCTGT GTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTGEST: gi|30129560|gb|CB914899.1|CB914899
genomic: TGAAGAGTGGCATTCTGATCTACTTGGTTGTTGTTCAGAACCTTCTCTGTgtatgtgctc ... ttctttgcagGTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTG
EST: TGAAGAGTGGCATTCTGATCTACTTGGTTGTTGTTCAGAACCTTCTCTGT GTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTGEST: gi|30299868|gb|CB976662.1|CB976662
genomic: TGAAGAGTGGCATTCTGATCTACTTGGTTGTTGTTCAGAACCTTCTCTGTgtatgtgctc ... ttctttgcagGTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTG
EST: TGAAGAGTGGCATTCTGATCTACTTGGTTGTTGTTCAGAACCTTCTCTGT GTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTG
genomic: TGAAGAGTGGCATTCTGATCTACTTGGTTGTTGTTCAGAACCTTCTCTGTgtatgtgctc ... ttctttgcagGTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTG
ttgttattagtaatgtaattcaaggaattctaaacagttcattcattctttgcagGTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTGTGGCAACTAACAGGCACATGT
ttctaaa putative branch site (score: 2)
ttcattcattcttt putative PPT
attagtaatgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctactatagatggtcctatatgaacttgttaagcatgctatattgttattagtaatgtaattcaaggaattctaaacagttcattcattctttgcagGTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTGTGGCAACTAACAGGCACATGT
ttgctac
- - - - -tagatgg
- - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaca