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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaaacttgagtatatcctgtgcctgtgttacagattgtctaacttggttaattctattgtttgtaatagattcgttgatattatgtacttgaatttctgcagGCTGCCATGGGCACAATGGATGGCATCATTGATACAGTCTCTGCTGTTCACCCTCTTCTTCCATTGATCGGTTTGTTGAAATCTCAAGGGAAGCTCGTTA

Basic information

species Vitis vinifera
transcript Vv00s0346g00110.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128929|gb|CB914268.1|CB914268
EST:     ACCTTGGTGCCGACTACTTTCTAGTCAGCCGCGACCCAGATCAGATGCAG                         GCTGCCATGGGCACAATGGATGGCATCATTGATACAGTCTCTGCTGTTCAC
genomic: ACCTTGGTGCCGACTACTTTCTAGTCAGCCGCGACCCAGATCAGATGCAGgtaggtaaac ... atttctgcagGCTGCCATGGGCACAATGGATGGCATCATTGATACAGTCTCTGCTGTTCAC
EST: gi|30128707|gb|CB914046.1|CB914046
EST:     ACCTTGGTGCCGACTACTTTCTAGTCAGCCGCGAACCAGATCAGATGCAG                         GCTGCCATGGGCACAATGGATGGCATCATTGATACAGTCTCTGCTGTTCAC
genomic: ACCTTGGTGCCGACTACTTTCTAGTCAGCCGCGACCCAGATCAGATGCAGgtaggtaaac ... atttctgcagGCTGCCATGGGCACAATGGATGGCATCATTGATACAGTCTCTGCTGTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattctattgtttgtaatagattcgttgatattatgtacttgaatttctgcagGCTGCCATGGGCACAATGGATGGCATCATTGATACAGTCTCTGCTGTTCACCCTCTTCTTCCATTGATCGGTTTGTTGAAATCTCAAGGGAAGCTCGTTA
                                              tttctgc  CT-rich tract
 tattgtttgtaata  TA-rich tract