Sequence
atgc intronic sequence ATGC exonic sequence...ttggtgtgtctgttttttttctttcttttctaaatcattcaaattaaatagtcattttttaatgtgatggtacatggtgatttatgttaataaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34570.1 (Glycine max), 3'ss of exon 4
ttggtgtgtctgttttttttctttcttttctaaatcattcaaattaaatagtcattttttaat-gtgatgg-tacatggtgatttatg-----ttaataaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
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------agcatgcatttcttgcaaagggt-taaattggcagtgtgtaatgattttgtacttctagtaatttctgcactgtcatctctgatctttttttatgttaaagGTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGCTGTTCTCTTTGGTTTCTTTGTGCAACTCAACCGTATGTACACAGATACT
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G32980.1 (Glycine max), 3'ss of exon 4
ttggtgtgtctgttttttttctttcttttctaaatcattcaaattaaatagtcattttttaatgtgatggtacatggtgatttatgttaataaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
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cttgcaaagggttaaattggcagtgtgtaatgattttgtacttctagacttctagtaatttctgcactgtcatctctgatcttctttctttatgttaaagGTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGCTGTTCTCTTTGGTTTCTTTGTACAACTCAACCGTATGTACACAGATACT
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G16300.1 (Arabidopsis thaliana), 3'ss of exon 3
-------ttggtgtgtctgttttttttctttcttttctaaatcattcaaattaaatagtcattttttaatgtgatggtacatggtgatttatgt-taataaatttca-----gGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
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gtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgt-cactctgattctagtattttgaatatcaaaaaagGTACGAGCCTTATCTTTGGGAGAACGAAAAGCAGTCGTACCTACGCCATGCTGTACTCTTTGGTTTCTTTGTGCAACTAAACCGAATGTACACAGATACT
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G16300.4 (Arabidopsis thaliana), 3'ss of exon 3
-------ttggtgtgtctgttttttttctttcttttctaaatcattcaaattaaatagtcattttttaatgtgatggtacatggtgatttatgt-taataaatttca-----gGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
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gtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgt-cactctgattctagtattttgaatatcaaaaaagGTACGAGCCTTATCTTTGGGAGAACGAAAAGCAGTCGTACCTACGCCATGCTGTACTCTTTGGTTTCTTTGTGCAACTAAACCGAAT-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712618|gb|FC061941.1|FC061941EST: GGGTTGGTAGATCGTTTTTCACAGAGAATGGATCCCATAGACTGGCTTAC GTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGC
genomic: GGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttctt ... taaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatagtcattttttaatgtgatggtacatggtgatttatgttaataaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
tgttaat putative branch site (score: 3)
tgatttatgttaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggtgtgtctgttttttttctttcttttctaaatcattcaaattaaatagtcattttttaatgtgatggtacatggtgatttatgttaataaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGCTGTACTTTTTGGATTCTTTGTGCAACTTAATCGGATGTATACCGATACT
- - - tgtctgt
- - - - - - - - - - - - - - - -aaatcat
- - - - - - - - - - - - - - - - - - - - aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgg