1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgttacacccaataacaattcacatatggtactgtttggagtttgaatctttattatcattgtgcggacactcatcagtaattcggttttgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACACTAACAAACGAAGCATGCTAGTTGTTCCTAGACACTAGAATAGATAATC
species | Vitis vinifera |
transcript | Vv00s0317g00100.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACAEST: gi|110419954|gb|EC986212.1|EC986212
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACAEST: gi|110388643|gb|EC953416.1|EC953416
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGTAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAAAGGAGAAACGCCGTATGGAGTTGCAEST: gi|32245762|gb|CD711581.1|CD711581
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACAEST: gi|32269988|gb|CD719147.1|CD719147
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACAEST: gi|30327867|gb|CD011129.1|CD011129
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACAEST: gi|27582226|gb|CB004921.1|CB004921
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACAEST: gi|110430017|gb|EC996537.1|EC996537
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
EST: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAG GTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
genomic: AAACTTGAAGAAGTTCGAAATAAGATCATTTGAGAAGTATCAGTTCAAAGgtacatcatt ... tgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACA
gaatctttattatcattgtgcggacactcatcagtaattcggttttgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACACTAACAAACGAAGCATGCTAGTTGTTCCTAGACACTAGAATAGATAATC
tttattatcattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttacacccaataacaattcacatatggtactgtttggagtttgaatctttattatcattgtgcggacactcatcagtaattcggttttgtatcttagGTGCTCTCTTGAGTTTGTGTTCAAAACGGAGAAACGCCGTATGGAGTTACACTAACAAACGAAGCATGCTAGTTGTTCCTAGACACTAGAATAGATAATC
- - -acaccca
- - - - - - ataacaa
- - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactcat