Sequence
atgc intronic sequence ATGC exonic sequence...tttgactacgaagcttgttattcacttatgatgttgagtcctttgacatgcagcttaactggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 4
tttgactacgaagcttgttatt-cacttatgatgttgagt----cctttgacatgcagcttaactggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG
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--gaataacctatattatttttatggttgtaatcctcagtaaaatttctgataaacatgttgtataatt---actgagtctgaagtcatgtttgtttcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGGCTCAG
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 3
tttgactacgaagcttgttattcacttatgatgttgagtcctttgaca--tgcagcttaac-tggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG
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---gtatgaataacctatattattttcatggtgataatccacaccaaaatttctgataaacatgttgtataattactctgaagtaatgtttgtctcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAG
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 3
tttgactacgaagcttgttattcacttatgatgttgagtcctttgacatgcagcttaactggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG
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----------gtgagcattgtgca-taattatgttcataggctttacgtgttgaatgagtagtaatgactggccttatcctgat----tatctttggcagCTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATTTGCTTTTGGCATGGGACTAACTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706912|gb|FC056800.1|FC056800EST: GTTCTATCTGAGTGGGGGATTCTTTTCTTG CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCA
genomic: GTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcact ... tccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatgcagcttaactggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG
gactaat putative branch site (score: 2)
cattttcctt CT-rich tract
tttatattcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgactacgaagcttgttattcacttatgatgttgagtcctttgacatgcagcttaactggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG
- - - - - - - - - tattcac
- - - - - - - - - - - - - - - - - - - - - - -acatgca