Sequence
atgc intronic sequence ATGC exonic sequence...tctttgtttagtacattcatgactaatgatgtgtatcagattttctttcagttccactcatttctgtagtgtgtttttaattggtgcatgttttaatcagATTTGTCAGAGGAGCTAAACCCGGTCAGCGGACAGGATTCAACATGGATGATTCTGACCTTTTTGAGATGGAGCAATGTCATGGTGTGGTTGTTGCATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G31680.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------------tctttgtttagtacattcatgactaatgatgtgtatcagattttctttcagttcc--act--catttctgtagtgtgt-ttttaattggtgcatgttttaatcagATTTGTCAGAGGAGCTAAACCCGGTCAGCGGACAGGATTCAACATGGATGATTCTGACCTTTTTGAGATGGAGCAATGTCATGGTGTGGTTGTTGCATCT
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gtatgttttgctttttgttgaatgtttccctaataagtaacatctatacccaccaaggaatgttctttgtggttatagttgtctg-cgctagtaattaagcattcttgtaatttcttactgacatgaattcattctccatcttcaataatgaatataccaatcagATTTGTTAGAGGAATTAAACCTGGCCGCAACACAGGATTTGACATTGATGGAGCTGACCTTTTTGAAATGGAGCAGTGTGATGGAGTGGTTGTTGCATCA
upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G24770.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------tctttgt--ttagtacattcatgactaatgat-gtgtat-cagattttctttcagttccactcatttctgtagtgtgtttt-taattggtgcatgttttaatcagATTTGTCAGAGGAGCTAAACCCGGTCAGCGGACAGGATTCAACATGGATGATTCTGACCTTTTTGAGATGGAGCAATGTCATGGTGTGGTTGTTGCATCT
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gtatgttttgctttttgttgaatgtttcccttacttataagttacatctatacccactgaggaatgttctttgtggttataattgtccgtgctagtaattaagcattcttgtacctttttactgacatgaattcattctccatcttcaataatgaatgtgtataccaatcagATTTGTTAGAGGAATTAAACCTGGTCGCAACACAGGATTTGACATTGATGAAGCTGACCATTTTGAAATGGAGCAGTGTAATGGAGTGGTTGTTGCATCA
upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------------------tctttgtttagtacattcatgactaatgatgtgtatcagattttctttcagttccactcatttctgtagtgtgt-ttttaattggtgcatgttttaatcagATTTGTCAGAGGAGCTAAACCCGGTCAGCGGACAGGATTCAACATGGATGATTCTGACCTTTTTGAGATGGAGCAATGTCATGGTGTGGTTGTTGCATCT
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gtatgtttcgtgatttgttggatgtttcccttctgtatatctatgagtactgaagaaggttgtttgtggttataatttgtttgtttcagtaataacggtatttctcctatc--cttttacttacatctgtccatgctgcatctacaatgatgcatgtgtacatcattcagATTTGTTAGAGGAACTAAACCTGGCCGCAACACAGGATTTGACATGGATGAAGATGATCTCCTTGAAATGGAGCAGTGTCATGGTGTAGTTGTTGCATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcagttccactcatttctgtagtgtgtttttaattggtgcatgttttaatcagATTTGTCAGAGGAGCTAAACCCGGTCAGCGGACAGGATTCAACATGGATGATTCTGACCTTTTTGAGATGGAGCAATGTCATGGTGTGGTTGTTGCATCT
ttttaat putative branch site (score: 3)
tgtttttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctttgtttagtacattcatgactaatgatgtgtatcagattttctttcagttccactcatttctgtagtgtgtttttaattggtgcatgttttaatcagATTTGTCAGAGGAGCTAAACCCGGTCAGCGGACAGGATTCAACATGGATGATTCTGACCTTTTTGAGATGGAGCAATGTCATGGTGTGGTTGTTGCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - tcatgac
- - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatg