1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcactgtcatatgcatattggttgctctgtacagtttgttttgttgcatgatatatttgctaatcatgagttctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGGCGAACACACATAA
species | Vitis vinifera |
transcript | Vv00s0252g00070.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|71875756|gb|DT024811.1|DT024811
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATEST: gi|351035098|gb|FQ458455.1|FQ458455
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|71874079|gb|DT023134.1|DT023134
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGATAGAGATTATTGACTCATAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTEST: gi|110709660|gb|EE085316.1|EE085316
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|71874542|gb|DT023597.1|DT023597
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAEST: gi|351019002|gb|FQ426501.1|FQ426501
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAA
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|34543038|gb|CF511270.1|CF511270
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|34544541|gb|CF512773.1|CF512773
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|71870368|gb|DT019423.1|DT019423
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|26261569|gb|CA812632.1|CA812632
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATGGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAEST: gi|110711525|gb|EE088102.1|EE088102
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAA
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAA-TTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|110377140|gb|EC942200.1|EC942200
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|110712956|gb|EE088454.1|EE088454
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|34542953|gb|CF511185.1|CF511185
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|110685212|gb|EE063375.1|EE063375
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|110712683|gb|EE087943.1|EE087943
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGGCTA-TGCAEST: gi|294967018|gb|GW839893.1|GW839893
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGG-CTAATGCA
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTAGTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|352768501|gb|FQ467457.1|FQ467457
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCANAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATEST: gi|110711122|gb|EE087316.1|EE087316
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGANGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAGTGCATEST: gi|110713232|gb|EE088975.1|EE088975
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
EST: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAA-TTATTGACTCAAAG AGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
genomic: ATACTGCTTTTGAGGAACTTAATCGGCTGAAAGAAATTATTGACTCAAAGgtcactgtca ... tctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCAT
ctgtacagtttgttttgttgcatgatatatttgctaatcatgagttctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGGCGAACACACATAA
tgctaat putative branch site (score: 2)
ttctcttgc putative PPT
atatatttgctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactgtcatatgcatattggttgctctgtacagtttgttttgttgcatgatatatttgctaatcatgagttctcttgcagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGGCGAACACACATAA
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