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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgagagaatcttatattcctaatattaagtgtttaaggattttgttgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctaatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA

Basic information

species Vitis vinifera
transcript Vv00s0233g00030.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttgagagaatcttatattcctaatattaagtgtttaaggattttgttgcttctttttgccccttcatatgtatatatgtatgttcgtctt-ttgggtgccgtcagcgtctaatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA
                                                          |     |||  |    | ||      || | ||    ||| || |    || || |  | | ||   | ||  |||||||| |||||||||||||||  ||||| ||||| ||||| ||||||||||||||||| |||    |  |        |    ||     |     |  
---------------------------------------------------------gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtactcatagagtttt-tttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtatgttcgtcttttgggtgccgtcagcgtctaatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA
                                gtctaat  putative branch site (score: 3)
                                              ttttgtt  putative PPT
                                             attttgtta  TA-rich tract