Sequence
atgc intronic sequence ATGC exonic sequencegtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 3
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgt-ttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
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----------------------------------------------------------------------------------gtatgattgccttccaa---tgtctggttgatttgtttttatcatcccttgtg--ttacctttatgatg----ttcagcttgcagATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G41740.1 (Glycine max), 3'ss of exon 3
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttact-tgtttatcctttttgcatggaatttacaatc--cat-ttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
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----------------------------------------------------------------------gttctctttcctagtcaggcagatgatttatttatttttaaaaataataatgaataatttcttcctgtggaaatgacaatcatcatgttcctgcacccagATAACAGATGCTGTTGTTGTTGCACGAATTCTTAATGCCACACTAGTAGTACCTGAGTTGGATCATCATTCTTATTGGAAAGATGACAG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G15170.1 (Glycine max), 3'ss of exon 3
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgt-gtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
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------------------------------------------------------------------tctctctgtagtctaatgcatataatttttctctttttttctcaattaattaattaaccagttcttcc-tgtggaaatgacaatcatattcttgtctccagATAACAGATGCAGTTGTTGTTGCAAGAATTCTTAATGCTACATTAGTTGTACCTGAGTTGGATCATCAATCTTTTTGGAAAGATGACAG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G04720.1 (Glycine max), 3'ss of exon 3
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
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------------------------------------------------------ggaggctcagattctttctgt---agtctaatgaatata------atttttctcaattaattaataaacaagttcttcc-tgtggaaatgacaatcatattcttgt--ccagATAACAGATGCAGTTGTTGTTGCAAGAATTCTTAATGCTACACTAGTTGTACCTGAGTTGGATCATCAATCTTTTTGGAAAGATGACAG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 4
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgct-gttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatc--cat-ttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
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----------------------------------------------------------------gttagtttcctagtcaggctcataa---ttttatatattt---ttaaaaataaaaatgaacaagttctttctatggaaatgacactcatcatgttcctgcatccagATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G16650.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
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gtaagtgaaa------ttatgtgtcaagaataaacgtgttaggatat-tacaat-------tatattgcttatttgcccaactaaaaaagat----tatgctgcttattgtccttagggagttaggacctgcattttgaaa---ataatgttctctttgtgtgcagATAACTGATGCAGTGGTTGTTGCACGGATTCTTAATGCTACTTTAGTTGTACCCGAGTTGGATCACCATTCTTACTGGAAAGATGACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706756|gb|FC056366.1|FC056366EST: GCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGA ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTA
genomic: GCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataa ... ctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
tccatttcct CT-rich tract
aatttacaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG