Sequence
atgc intronic sequence ATGC exonic sequencegtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G41800.1 (Glycine max), 3'ss of exon 5
gtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
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---gtgtgtacttaactcttgacctgcttccaatcccaagatagttttgtaccctttgctg---attttgattt-tgatatagGCAATGGCTTCTGAGGTTCAAAATCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G41790.1 (Glycine max), 3'ss of exon 7
gtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
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---gtgtgtacttaactcttgacccacttccactcccaagattcttctgtaccctttgctg---attttgattt-tgatatagGCAATGGCTCTTGAGGTTCAAAATCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G03580.1 (Glycine max), 3'ss of exon 8
gtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
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---gtgtgtactaaactctttacctgtttccagtccca---agattttgtacccttggctg---attttgatat-tgatatagGCAATGGCTCTTGAAGTTCAAAATCTTCTTGTCTCTGGCAAAAAGAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 8
gtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
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---gtgtgtacttaactcttgaccagcttccactcccaagattgttttgtaccctttgctg---attttgattttcatat-agGCAATGGCTCTTGAGGTTCAAAATCTTCTTGTCTCTGGCAAAAAAAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G47480.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaat--gtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
| | | || | || ||| | | | | ||| | || || || | || ||| ||||||||| || || |||| |||||||| |||||||||||| | ||||||||||| ||||| |||||||| || || |||||||| || |||||
-----gtgagtattggacatcaaatcccatatactctttcgaggacgtttttttttcctgattaactcgtggaagaattccccagGTAACTGCTTCAGAGGTTCAGAATCTTCTGGCTTCTGGTAGAAAAATGGAGGCTCTACAATGTGCGCAAGAAGGCCATTTATGGGGACCGGCACTTGTCA
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G47490.1 (Arabidopsis thaliana), 3'ss of exon 3
----------------gtattccgtgattcactttccacacttcagtatttctattcgcaatttg--tccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
||| || ||| | || || | | | |||||| || || | ||| ||| || | | || | ||| ||||||||| || || |||| |||||||| |||||| || |||| |||||||| || |||||||||||||| || || |||||||| || ||||||
gtgagtattagacatcatatctggt-atttatctttca-aggagaatgtttctaaaattaacatggttttgcttattaactcatttggaagaattgtccagGTAACTGCTTCAGAGGTGCAGAATCTTCTGGCTTCTGGCAGGAAGATGGAGGCTCTCCAATGTGCACAAGAAGGTCATTTATGGGGACCAGCGCTTGTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
tttagtaataaatgtc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattccgtgattcactttccacacttcagtatttctattcgcaatttgtccctttagtaataaatgtcaatatatgttttagGCAACTGCTTCTGAAGTACAGAGTCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG