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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccacaacaaccgtatttctatttttttccgtttttctactttaggagctactcttatctacattgccaagtttattaacctgaattctttgggttgcatgtgtaaggctcactatgagttggtcttgaaccatgaaaatgcttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGACTCGTATTCCCAGCAGATGCAATTGCAAGAGCTAAACACTACCTTTCAT

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351026306|gb|FQ428318.1|FQ428318
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|33409277|gb|CF214904.1|CF214904
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTCGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|110390025|gb|EC954908.1|EC954908
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351029331|gb|FQ436725.1|FQ436725
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349816294|gb|FQ399404.1|FQ399404
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     TGGGCAACCCCCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|56408495|gb|CX016747.1|CX016747
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|352781104|gb|FQ466417.1|FQ466417
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351023886|gb|FQ423309.1|FQ423309
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     TGGGCGACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351036343|gb|FQ458718.1|FQ458718
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCGG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|110692196|gb|EE071162.1|EE071162
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|29785300|gb|CB342168.2|CB342168
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|110429970|gb|EC996489.1|EC996489
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349827710|gb|FQ422578.1|FQ422578
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351018395|gb|FQ439207.1|FQ439207
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|161712960|gb|FC062086.1|FC062086
EST:     TGGGCAACGCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349819777|gb|FQ404499.1|FQ404499
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCCCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|27755408|gb|CB036163.1|CB036163
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|27755104|gb|CB035859.1|CB035859
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|29785236|gb|CB342047.2|CB342047
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGCAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|71856263|gb|DT005318.1|DT005318
EST:     GCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: GCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|77584537|gb|DV221338.1|DV221338
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|27578703|gb|CB001398.1|CB001398
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|71859561|gb|DT008616.1|DT008616
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351049355|gb|FQ429098.1|FQ429098
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|71861897|gb|DT010952.1|DT010952
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCGAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351040447|gb|FQ434580.1|FQ434580
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTACTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351046382|gb|FQ452998.1|FQ452998
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCGAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     TGGGCAACCCTCATGCCCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349809424|gb|FQ411922.1|FQ411922
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCCATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|71857747|gb|DT006802.1|DT006802
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|18459105|gb|BM437383.1|BM437383
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|32250126|gb|CD715945.1|CD715945
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|27578701|gb|CB001396.1|CB001396
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349808686|gb|FQ405830.1|FQ405830
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCGAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|110385291|gb|EC949801.1|EC949801
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351012478|gb|FQ427079.1|FQ427079
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|71856656|gb|DT005711.1|DT005711
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351029308|gb|FQ436702.1|FQ436702
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCGAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|30127296|gb|CB912635.1|CB912635
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|352769573|gb|FQ468501.1|FQ468501
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|349832657|gb|FQ422015.1|FQ422015
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|294965073|gb|GW838876.1|GW838876
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCGAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     TGGGCAACCCTCATGCTCTAGGACAGAAACTACTGACTTTTCCTCGCCAG                         GTGGTTGCTCTATGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA
genomic: TGGGCAACCCTCATGCTCTAGGACAGAAACCACTGACTTTTCCTCGCCAGgtccacaaca ... cttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgtgtaaggctcactatgagttggtcttgaaccatgaaaatgcttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGACTCGTATTCCCAGCAGATGCAATTGCAAGAGCTAAACACTACCTTTCAT
          ggctcac  putative branch site (score: 3)
                                    atgaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtccacaacaaccgtatttctatttttttccgtttttctactttaggagctactcttatctacattgccaagtttattaacctgaattctttgggttgcatgtgtaaggctcactatgagttggtcttgaaccatgaaaatgcttgttgcagGTGGTTGCTCTTTGCCAAGCTCCATTTCTATTAGATGATCCTAATGTAGGACTCGTATTCCCAGCAGATGCAATTGCAAGAGCTAAACACTACCTTTCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT