Sequence
atgc intronic sequence ATGC exonic sequence...cttcttattcccttccttacaagcacttctagttcctagtaaataagttctatatgcttttgtttaacatccatttccttccttgactttgcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G38990.1 (Glycine max), 3'ss of exon 3
cttcttattcccttccttacaagcacttctagttc-ctagtaaataagttctatatgcttttgtttaacatccatttccttccttgactttgcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA
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-tgaatacccaaattatgataattacaactgctacattgaccttcaagtttttcaattattttcaaatcgacatttttatgttgtctttctgcacctatagGATGCTGTGGAGTATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGA
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G20800.1 (Glycine max), 3'ss of exon 3
cttcttattcccttccttacaagcacttctagttcctagtaaataagttctatatgcttttgtttaacatccatttccttccttgactttgcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA-
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attatgataattactgcaactgctacattgaccttcaagttcttagtttcaattattttcaaatcaacatt-gcttatgttgttctctctgaacctgtaggATGCTGTGGAGTATGCAGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCATTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGAT
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G04360.1 (Glycine max), 3'ss of exon 3
cttcttattcccttccttacaagcacttctagttcctagtaaat-aagttctatatgcttttgtttaacatccatttccttccttgactttgcaatg---atagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA
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----gtgttaggctacaaacatgatgtggtattttttattgatttacgatccattagtttcaaatcaacaaagatttgtgttattcactatagtatacatacagGATGCTGTGGAGTATGCTGAATGTGAAGCTGCTGTGAAAGATTTCCCTCCATTTCGTGAAGCAATGAAGAGAAGAGGGATAGAGGACATGGATCTTGTGA
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S178_54V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------------cttcttattcccttccttacaagcacttctagttcctagtaaataagttctatatgcttttgtt-------taacatccatttccttccttgactttgcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA
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gtaggggtgctaagtctctgtagtagtcgttagttttctcatttactaggtggcacgaagtt--aattctttgagaagtgcctgtgggggcttttatcactgttctgtaagtgacttttacaattcgtgctgcgctgtcagGATGCTGTGGAGTATGCTGAATGTGAAGCAACTGTGAAAGAGCATCCGTCTTTCGTTGAAGCCATGAAGAAACGGGGTATCGAGGATATGGATCTTGTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710705|gb|FC059063.1|FC059063EST: GGGGCAAGGTCATTTCATCCAAAGTTGTTGCTGATGTCCAGCCTCCTATG GATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCA
genomic: GGGGCAAGGTCATTTCATCCAAAGTTGTTGCTGATGTCCAGCCTCCTATGgtatagtact ... gcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCA
EST:
gi|161721603|gb|FC070813.1|FC070813EST: AAAGTTGTTGCTGATGTCCAGCCTCCTATG GATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCA
genomic: AAAGTTGTTGCTGATGTCCAGCCTCCTATGgtatagtact ... gcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttctatatgcttttgtttaacatccatttccttccttgactttgcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA
ttttgtttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttcttattcccttccttacaagcacttctagttcctagtaaataagttctatatgcttttgtttaacatccatttccttccttgactttgcaatgatagGATGCTGTAGAATATGCTGAATGTGAAGCTGTTGTAAAGGATTTTCCTCCATTTCGGGAGGCAATGAAGAAAAGGGGTATTGAGGATATGGATCTTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - -cccttcc
- - - - - - - - - acaagca
- - - - - - - - - - - - -cttctag
- - - - - - - - - - - - - - - - - - - - aaataag