Sequence
atgc intronic sequence ATGC exonic sequence...acttgaatttttcagcatagattccttttcggcatcgattttgagttggtgctttgtgtacaagttgatatcctactgaaaatcttttgtgtttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 3
acttgaatttttcagcatagattccttttcggcatcgatt---ttgagttggtgctttgt-gtacaagttgatatcctactgaaaatcttttgtgtttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
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---tgaaatatttggcatagtacgttgttgtgggccgggtgaattttgttaaaactttgcagttcatgtt-atagtggatttagttgattttcttttggtgaagGGACTGGAACTGATACCCTCCGAGAATTTCACTTCTGTCTCTGTAATGCAAGCTATTGGCTCTATCATTACTAACACTCGGAATGAAGGATATCCCGGTG
upper sequence: Vv00s0211g00160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 4
acttgaatttttcagcatagattccttttcggcatcgattttg--agttggtgctttg-tgtacaagttgatatcctactgaaaatcttttgtgt-ttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
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tctctaatttatatcttaggattgaaatttgaaatcaagtctattaataaaagttatgatgtatagattgacttttttt----gtttttgggtgaactgtgaagGGGCTGGAACTGATACCGTCAGAGAATTTCACTTCTGTGTCTGTGATGCAAGCAGTTGGATCTGTGATGACCAACAAATACAGTGAGGGGTACCCTGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtgctttgtgtacaagttgatatcctactgaaaatcttttgtgtttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
agttgat putative branch site (score: 5)
aaaatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttgaatttttcagcatagattccttttcggcatcgattttgagttggtgctttgtgtacaagttgatatcctactgaaaatcttttgtgtttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT