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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttgaatttttcagcatagattccttttcggcatcgattttgagttggtgctttgtgtacaagttgatatcctactgaaaatcttttgtgcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 3
acttgaatttttcagcatagattccttttcggcatcgatt---ttgagttggtgctttgt-gtacaagttgatatcctactgaaaatcttttgtgcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
   |||| | ||  ||||||     | ||  |   ||  |   ||  |||    |||||  || || ||| |||    | | |     |||| |  | || |||||||| ||||| |||||||||||||| ||||||||||| || || ||||||||| |||| ||||| || || ||||     |  ||||||||||| || |
---tgaaatatttggcatagtacgttgttgtgggccgggtgaattttgttaaaactttgcagttcatgtt-atagtggatttagttgattttcttttggtgaagGGACTGGAACTGATACCCTCCGAGAATTTCACTTCTGTCTCTGTAATGCAAGCTATTGGCTCTATCATTACTAACACTCGGAATGAAGGATATCCCGGTG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 4
acttgaatttttcagcatagattccttttcggcatcgattttg--agttggtgctttg-tgtacaagttgatatcctactgaaaatcttttgtgc-ttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
 ||  ||||| |       ||||    || |  ||| | | |   | |    | | || |||| |  ||||  |  |        | ||  |||   ||| ||||| || ||||| ||||| || ||||| |||||||||||||| || |||||||| ||||| ||| | ||||| ||||| ||||| || || || || || |
tctctaatttatatcttaggattgaaatttgaaatcaagtctattaataaaagttatgatgtatagattgacttttttt----gtttttgggtgaactgtgaagGGGCTGGAACTGATACCGTCAGAGAATTTCACTTCTGTGTCTGTGATGCAAGCAGTTGGATCTGTGATGACCAACAAATACAGTGAGGGGTACCCTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018888|gb|FQ425790.1|FQ425790
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTCCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352768987|gb|FQ468178.1|FQ468178
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351025653|gb|FQ426667.1|FQ426667
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|349822117|gb|FQ412381.1|FQ412381
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     ATCCTGAAATTGCAGACATTACTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352773363|gb|FQ470950.1|FQ470950
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGGAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351022606|gb|FQ447128.1|FQ447128
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351045470|gb|FQ440655.1|FQ440655
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352777763|gb|FQ466816.1|FQ466816
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352767847|gb|FQ466056.1|FQ466056
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352768544|gb|FQ467500.1|FQ467500
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352763990|gb|FQ467560.1|FQ467560
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352769465|gb|FQ471614.1|FQ471614
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352777353|gb|FQ473987.1|FQ473987
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352768409|gb|FQ469585.1|FQ469585
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|46917672|gb|CN547001.1|CN547001
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352768239|gb|FQ469414.1|FQ469414
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352773662|gb|FQ472444.1|FQ472444
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG                         GGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA
genomic: ATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAGgtgatatctc ... gcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgctttgtgtacaagttgatatcctactgaaaatcttttgtgcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG
                 agttgat  putative branch site (score: 5)
                                 aaaatctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acttgaatttttcagcatagattccttttcggcatcgattttgagttggtgctttgtgtacaagttgatatcctactgaaaatcttttgtgcttgtaaagGGACTTGAACTCATACCCTCCGAGAACTTCACTTCTGTGTCAGTTATGCAAGCTGTTGGGTCTATTATGACAAACAAGTACAGCGAAGGATATCCAGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT