1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaggcatgctgatggatagatgcatacttatatttctgagcttgatgtggtaataactagtgagcactgattatgtgaactttcttactggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAACTTCTTTGCGCACACGCTGAGGGGCAGTTTGATCGGCACTGTAATTTG
species | Vitis vinifera |
transcript | Vv00s0207g00220.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAEST: gi|110364615|gb|EC927998.1|EC927998
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCATTAATTCTTCTTCTGGTTGTGGCTCCCAEST: gi|110378448|gb|EC943581.1|EC943581
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAEST: gi|110402069|gb|EC968702.1|EC968702
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAEST: gi|110399404|gb|EC965908.1|EC965908
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAEST: gi|110389361|gb|EC954190.1|EC954190
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAEST: gi|110402082|gb|EC968715.1|EC968715
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
EST: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG ACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
genomic: TGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAGgtatattctc ... ggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCA
atgtggtaataactagtgagcactgattatgtgaactttcttactggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAACTTCTTTGCGCACACGCTGAGGGGCAGTTTGATCGGCACTGTAATTTG
taataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaggcatgctgatggatagatgcatacttatatttctgagcttgatgtggtaataactagtgagcactgattatgtgaactttcttactggtgatgcagACTGGCTGGAGATGCCCGGGTCCTTAATTCTTCTTCTGGTTGTGGCTCCCAACTTCTTTGCGCACACGCTGAGGGGCAGTTTGATCGGCACTGTAATTTG
- - gcatgct
- - - - - - -tggatag
- - - - - - - - - - - gcatact
- - - - - - - - - - - - - - - - - - - gagcttg