Sequence
atgc intronic sequence ATGC exonic sequence...ctttgttttttaagtcttaaactatggtattgacttgttttgcttcatcaccattatttctttgtggttatattctaactttgcttttattgcactccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 1
ctttgttttttaa-gtcttaaactatggtattgacttgttttgcttcatcaccattatttctttgtggttatattctaactttgcttttattgcactccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
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-atgattatacattgtttaggattaaaggcctggtatgattttcttgtcatgtatagctttctgtttgtcttgacttctcttttttgttttttgactccagCCAACGTCCAAATTAATTAAAGAAATTGCAGTGTTAGAGTTAGAAGTTATGCATTTGGAACAATATCTTCTCTCCTTGTATCGTAAAGCATTTGATCAAC
upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 2
ctttgttttttaagtctta-aactatggtattgacttgttttgcttcatcaccatta-tttctttgtg-gttatattctaactttgcttttattgcactccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
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-atgattatatatgtttagtaattataggtctgctatgaatttcttgtcaagtatggctttctgtttgtgttgacttttatttttggtttt-ttg-actccagCCAACGTCCAAATTAATTAAAGAAATTGCGGTGTTAGAGTTAGAAGTTGTGTATTTGGAACAATATCTTCTCTCCTTGTATCGTAAAGCATTTGATCAAC
upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------ctttgttttttaagtcttaa-actatggtattgacttgttttgcttcatcaccattatttctttgtggttatattctaac--tttgct-tttattgcactccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
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gtagcaacaagttcaataaacttcaggccaataaatatgcatatgaaaaaacagtgtcatatatgtgtcttggatcagaagatttttgtgcagcctatacatgattatacactgttatacatttctgttagtcttaaaaaaaattgttactttttgtattccagCCAGCCACAGAATTAATTAGGGAAATTGCAGTGTTAGAGTTGGAAGTTGTGTATTTGGAGCAACACCTTCTCTCCTTGTACCGTAAAGCTTTTGATCAAC
upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G66600.1 (Arabidopsis thaliana), 3'ss of exon 4
ctttgttttttaagtcttaaactatggtattgacttgttttgcttcatcaccattatttctttgtggttatattctaactttgcttttattgca-ctccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
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gtcagttacttacatttccca-----aaactgagttgtttagaa--atgagctttgtg-cattataaggaattgccatcttggttttgatttcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATACATTTGGAACAGTATCTTCTTTCATTATACAGAAAAGCCTTTGAGCAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcaccattatttctttgtggttatattctaactttgcttttattgcactccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
ttctaac putative branch site (score: 1)
cttttatt putative PPT
ttatattctaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttgttttttaagtcttaaactatggtattgacttgttttgcttcatcaccattatttctttgtggttatattctaactttgcttttattgcactccagCCTGCTATGGAACTAATTAAGGAAATTGCAGTGTTAGAATTGGAAGTTGTGCATTTGGAACAGTATCTTCTTTCACTGTACCGGAAAGCATTTGATCAAC
- - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - -catcacc