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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattttatatgccaagattttaaaaaatcttttctctttttaatgaaatatagttataaataagttttatggcttgcacttggcaagtgtatgattatttgctatttatcttcatgatgttggctctacaattttttattgttgaatttgaacgtgttcagGCAAAAGCACTGGCTGAGAAAAATCAGTGGGATCTCCAAACTCAGAGGGAACAAGCAGAGAGACAT

Basic information

species Vitis vinifera
transcript Vv00s0188g00210.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0188g00210.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G38660.1 (Glycine max), 3'ss of exon 8
gtatgtatt-ttatatgccaagattttaaaaaatcttttctctttttaatg----aaatatagttata-aataagttttatggcttgcacttggca---agtgtatgattatttgctatttatcttcatgatgttggctctacaattttttattgttg--aatt-tgaacgtgtt----cagGCAAAAGCACTGGCTGAGAAAAATCAGTGGGATCTCCAAACTCAGAGGGAACAAGCAGAGAGACAT
|||||||||   ||||        || |    || | |||    ||| |||    ||  |||| |  | |||  | | | |       ||||| ||   | | |||||  |  |  | |  ||  ||| ||| ||   | ||    ||||| ||      |||  | | | | ||    ||||| ||||||||||||||||| |||||  |||| || |||||||| || || ||||| |||||||||
gtatgtattaccatatttttctccttgatttgatttcttcatcatttcatgtagaaagaataggtgaacaatgtgatcttttaaaacaacttgacattgaatttatgaggaagta-tgtacattctcaagattttttttttaattgtttttgttaccaacaatcattatcattttacaccagGCTAAAGCACTGGCTGAGAAGAATCAACGGGACCTACAAACTCAAAGAGACCAAGCTGAGAGACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttcatgatgttggctctacaattttttattgttgaatttgaacgtgttcagGCAAAAGCACTGGCTGAGAAAAATCAGTGGGATCTCCAAACTCAGAGGGAACAAGCAGAGAGACAT
                    tacaattttttattgt  TA-rich tract